Strain Fitness in Agrobacterium fabrum C58 around Atu6020

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6019 and Atu6020 overlap by 4 nucleotidesAtu6020 and Atu6021 overlap by 4 nucleotides Atu6019: Atu6019 - D-nopaline dehydrogenase, at 28,273 to 29,691 Atu6019 Atu6020: Atu6020 - conserved hypothetical protein, at 29,688 to 29,981 Atu6020 Atu6021: Atu6021 - D-nopaline dehydrogenase, at 29,978 to 31,096 Atu6021 Position (kb) 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3at 28.765 kb on - strand, within Atu6019at 28.774 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.781 kb on + strand, within Atu6019at 28.784 kb on + strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.789 kb on - strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.795 kb on + strand, within Atu6019at 28.803 kb on - strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.805 kb on + strand, within Atu6019at 28.813 kb on - strand, within Atu6019at 28.863 kb on + strand, within Atu6019at 28.869 kb on - strand, within Atu6019at 29.003 kb on - strand, within Atu6019at 29.005 kb on + strand, within Atu6019at 29.025 kb on - strand, within Atu6019at 29.044 kb on - strand, within Atu6019at 29.049 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.091 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.094 kb on - strand, within Atu6019at 29.127 kb on - strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.189 kb on + strand, within Atu6019at 29.195 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.197 kb on - strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.202 kb on + strand, within Atu6019at 29.210 kb on - strand, within Atu6019at 29.239 kb on + strand, within Atu6019at 29.255 kb on - strand, within Atu6019at 29.266 kb on + strand, within Atu6019at 29.266 kb on + strand, within Atu6019at 29.271 kb on + strand, within Atu6019at 29.403 kb on - strand, within Atu6019at 29.405 kb on + strand, within Atu6019at 29.413 kb on - strand, within Atu6019at 29.423 kb on + strand, within Atu6019at 29.423 kb on - strand, within Atu6019at 29.470 kb on + strand, within Atu6019at 29.481 kb on + strand, within Atu6019at 29.562 kb on + strandat 29.565 kb on - strandat 29.594 kb on + strandat 29.626 kb on - strandat 29.700 kb on + strandat 29.754 kb on + strand, within Atu6020at 29.754 kb on + strand, within Atu6020at 29.820 kb on - strand, within Atu6020at 29.832 kb on - strand, within Atu6020at 29.832 kb on - strand, within Atu6020at 29.834 kb on + strand, within Atu6020at 29.885 kb on - strand, within Atu6020at 29.931 kb on - strand, within Atu6020at 29.990 kb on - strandat 30.034 kb on + strandat 30.082 kb on + strandat 30.129 kb on - strand, within Atu6021at 30.181 kb on + strand, within Atu6021at 30.189 kb on - strand, within Atu6021at 30.199 kb on - strand, within Atu6021at 30.295 kb on - strand, within Atu6021at 30.354 kb on + strand, within Atu6021at 30.455 kb on - strand, within Atu6021at 30.455 kb on - strand, within Atu6021at 30.500 kb on - strand, within Atu6021at 30.504 kb on + strand, within Atu6021at 30.521 kb on - strand, within Atu6021at 30.545 kb on + strand, within Atu6021at 30.583 kb on + strand, within Atu6021at 30.583 kb on + strand, within Atu6021at 30.588 kb on + strand, within Atu6021at 30.601 kb on - strand, within Atu6021at 30.621 kb on + strand, within Atu6021at 30.629 kb on - strand, within Atu6021at 30.635 kb on + strand, within Atu6021at 30.643 kb on - strand, within Atu6021at 30.652 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.657 kb on + strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.660 kb on - strand, within Atu6021at 30.798 kb on + strand, within Atu6021at 30.888 kb on + strand, within Atu6021at 30.891 kb on - strand, within Atu6021at 30.918 kb on - strand, within Atu6021at 30.930 kb on + strand, within Atu6021at 30.930 kb on + strand, within Atu6021at 30.935 kb on + strand, within Atu6021at 30.938 kb on - strand, within Atu6021at 30.942 kb on + strand, within Atu6021at 30.942 kb on + strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.950 kb on - strand, within Atu6021at 30.960 kb on - strand, within Atu6021

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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28,765 - Atu6019 0.35 +0.2
28,774 + Atu6019 0.35 -0.8
28,781 + Atu6019 0.36 +1.7
28,781 + Atu6019 0.36 -0.9
28,781 + Atu6019 0.36 +0.8
28,784 + Atu6019 0.36 -0.6
28,789 - Atu6019 0.36 +0.2
28,789 - Atu6019 0.36 +2.8
28,795 + Atu6019 0.37 +2.8
28,795 + Atu6019 0.37 +0.3
28,803 - Atu6019 0.37 -0.4
28,805 + Atu6019 0.37 +2.8
28,805 + Atu6019 0.37 +0.2
28,813 - Atu6019 0.38 -2.4
28,863 + Atu6019 0.42 +1.8
28,869 - Atu6019 0.42 +0.1
29,003 - Atu6019 0.51 -0.5
29,005 + Atu6019 0.52 +0.1
29,025 - Atu6019 0.53 -0.7
29,044 - Atu6019 0.54 +0.0
29,049 - Atu6019 0.55 +1.2
29,091 - Atu6019 0.58 +0.8
29,091 - Atu6019 0.58 -0.1
29,094 - Atu6019 0.58 -1.1
29,094 - Atu6019 0.58 +1.8
29,127 - Atu6019 0.60 +0.5
29,189 + Atu6019 0.65 -0.3
29,189 + Atu6019 0.65 +0.4
29,195 - Atu6019 0.65 +0.2
29,197 - Atu6019 0.65 -0.6
29,197 - Atu6019 0.65 +1.8
29,202 + Atu6019 0.65 -0.9
29,202 + Atu6019 0.65 -0.8
29,210 - Atu6019 0.66 +0.5
29,239 + Atu6019 0.68 -1.3
29,255 - Atu6019 0.69 -0.3
29,266 + Atu6019 0.70 -0.2
29,266 + Atu6019 0.70 +0.0
29,271 + Atu6019 0.70 +1.2
29,403 - Atu6019 0.80 +1.2
29,405 + Atu6019 0.80 +1.4
29,413 - Atu6019 0.80 +1.2
29,423 + Atu6019 0.81 +1.2
29,423 - Atu6019 0.81 +2.3
29,470 + Atu6019 0.84 +0.2
29,481 + Atu6019 0.85 +0.2
29,562 + +0.9
29,565 - +0.0
29,594 + +1.2
29,626 - +1.4
29,700 + -0.2
29,754 + Atu6020 0.22 -0.0
29,754 + Atu6020 0.22 -0.5
29,820 - Atu6020 0.45 -1.1
29,832 - Atu6020 0.49 -0.2
29,832 - Atu6020 0.49 +0.5
29,834 + Atu6020 0.50 -0.2
29,885 - Atu6020 0.67 +0.2
29,931 - Atu6020 0.83 -0.9
29,990 - -0.7
30,034 + +0.3
30,082 + +0.9
30,129 - Atu6021 0.13 +0.6
30,181 + Atu6021 0.18 -0.2
30,189 - Atu6021 0.19 +0.1
30,199 - Atu6021 0.20 +1.0
30,295 - Atu6021 0.28 -0.4
30,354 + Atu6021 0.34 +0.5
30,455 - Atu6021 0.43 +1.4
30,455 - Atu6021 0.43 +2.8
30,500 - Atu6021 0.47 -1.7
30,504 + Atu6021 0.47 +0.9
30,521 - Atu6021 0.49 +2.4
30,545 + Atu6021 0.51 -0.5
30,583 + Atu6021 0.54 +1.2
30,583 + Atu6021 0.54 +0.2
30,588 + Atu6021 0.55 +0.6
30,601 - Atu6021 0.56 +1.0
30,621 + Atu6021 0.57 +1.4
30,629 - Atu6021 0.58 +0.5
30,635 + Atu6021 0.59 +0.6
30,643 - Atu6021 0.59 +1.0
30,652 + Atu6021 0.60 -0.4
30,657 + Atu6021 0.61 -0.4
30,657 + Atu6021 0.61 +1.8
30,657 + Atu6021 0.61 -1.0
30,660 - Atu6021 0.61 -0.1
30,660 - Atu6021 0.61 +0.2
30,660 - Atu6021 0.61 +0.2
30,798 + Atu6021 0.73 +0.3
30,888 + Atu6021 0.81 +1.5
30,891 - Atu6021 0.82 -0.6
30,918 - Atu6021 0.84 +1.5
30,930 + Atu6021 0.85 -0.8
30,930 + Atu6021 0.85 +0.4
30,935 + Atu6021 0.86 -0.4
30,938 - Atu6021 0.86 +0.3
30,942 + Atu6021 0.86 +0.4
30,942 + Atu6021 0.86 -2.0
30,950 - Atu6021 0.87 +0.1
30,950 - Atu6021 0.87 +0.8
30,950 - Atu6021 0.87 -0.5
30,950 - Atu6021 0.87 -0.9
30,960 - Atu6021 0.88 -0.3

Or see this region's nucleotide sequence