Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8203 and Atu5175 are separated by 207 nucleotides Atu5175 and Atu5176 are separated by 1 nucleotides
Atu8203: Atu8203 - hypothetical protein, at 171,061 to 171,345
Atu8203
Atu5175: Atu5175 - two component response regulator, at 171,553 to 172,227
Atu5175
Atu5176: Atu5176 - two component sensor kinase, at 172,229 to 173,578
Atu5176
Position (kb) 171
172
173 Strain fitness (log2 ratio) -1
0
1
2
3 at 170.563 kb on + strand at 170.599 kb on + strand at 170.599 kb on + strand at 170.715 kb on + strand at 170.857 kb on + strand at 170.871 kb on + strand at 170.878 kb on - strand at 170.879 kb on - strand at 170.879 kb on - strand at 170.967 kb on + strand at 171.053 kb on + strand at 171.107 kb on + strand, within Atu8203 at 171.176 kb on + strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.291 kb on + strand, within Atu8203 at 171.321 kb on + strand at 171.371 kb on - strand at 171.376 kb on - strand at 171.385 kb on + strand at 171.417 kb on - strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.608 kb on + strand at 171.609 kb on - strand at 171.623 kb on + strand, within Atu5175 at 171.628 kb on + strand, within Atu5175 at 171.726 kb on + strand, within Atu5175 at 171.734 kb on - strand, within Atu5175 at 171.745 kb on + strand, within Atu5175 at 171.753 kb on - strand, within Atu5175 at 171.833 kb on - strand, within Atu5175 at 171.838 kb on + strand, within Atu5175 at 171.841 kb on - strand, within Atu5175 at 171.895 kb on + strand, within Atu5175 at 171.903 kb on - strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.914 kb on + strand, within Atu5175 at 171.979 kb on - strand, within Atu5175 at 172.015 kb on + strand, within Atu5175 at 172.017 kb on + strand, within Atu5175 at 172.057 kb on + strand, within Atu5175 at 172.067 kb on + strand, within Atu5175 at 172.084 kb on + strand, within Atu5175 at 172.091 kb on - strand, within Atu5175 at 172.231 kb on + strand at 172.277 kb on + strand at 172.282 kb on + strand at 172.285 kb on - strand at 172.306 kb on - strand at 172.308 kb on + strand at 172.403 kb on - strand, within Atu5176 at 172.419 kb on + strand, within Atu5176 at 172.509 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.569 kb on - strand, within Atu5176 at 172.603 kb on - strand, within Atu5176 at 172.694 kb on - strand, within Atu5176 at 172.694 kb on - strand, within Atu5176 at 172.766 kb on + strand, within Atu5176 at 172.835 kb on + strand, within Atu5176 at 172.862 kb on + strand, within Atu5176 at 172.994 kb on - strand, within Atu5176 at 172.999 kb on + strand, within Atu5176 at 172.999 kb on - strand, within Atu5176 at 173.025 kb on + strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.033 kb on - strand, within Atu5176 at 173.042 kb on - strand, within Atu5176 at 173.092 kb on - strand, within Atu5176 at 173.143 kb on - strand, within Atu5176
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 170,563 + +0.5 170,599 + -0.8 170,599 + +0.8 170,715 + +0.0 170,857 + +2.7 170,871 + +0.8 170,878 - -0.4 170,879 - +0.6 170,879 - +0.4 170,967 + -0.3 171,053 + +0.8 171,107 + Atu8203 0.16 +1.0 171,176 + Atu8203 0.40 +1.7 171,240 - Atu8203 0.63 +1.0 171,240 - Atu8203 0.63 +1.7 171,291 + Atu8203 0.81 -0.6 171,321 + -1.0 171,371 - +0.8 171,376 - -0.1 171,385 + -0.4 171,417 - +0.2 171,602 + +0.3 171,602 + -1.6 171,608 + -0.4 171,609 - +1.0 171,623 + Atu5175 0.10 +0.5 171,628 + Atu5175 0.11 +1.7 171,726 + Atu5175 0.26 +0.4 171,734 - Atu5175 0.27 +1.1 171,745 + Atu5175 0.28 -0.3 171,753 - Atu5175 0.30 +0.5 171,833 - Atu5175 0.41 -1.1 171,838 + Atu5175 0.42 +1.3 171,841 - Atu5175 0.43 +0.7 171,895 + Atu5175 0.51 +0.2 171,903 - Atu5175 0.52 +0.3 171,914 + Atu5175 0.53 +1.1 171,914 + Atu5175 0.53 +0.4 171,979 - Atu5175 0.63 +0.5 172,015 + Atu5175 0.68 -0.2 172,017 + Atu5175 0.69 +0.0 172,057 + Atu5175 0.75 +0.1 172,067 + Atu5175 0.76 +0.7 172,084 + Atu5175 0.79 +0.7 172,091 - Atu5175 0.80 -0.3 172,231 + +0.5 172,277 + +0.0 172,282 + -0.5 172,285 - +1.6 172,306 - -0.2 172,308 + +1.7 172,403 - Atu5176 0.13 +2.9 172,419 + Atu5176 0.14 -0.3 172,509 - Atu5176 0.21 -0.2 172,569 - Atu5176 0.25 -0.6 172,569 - Atu5176 0.25 +0.6 172,569 - Atu5176 0.25 +0.6 172,603 - Atu5176 0.28 +0.4 172,694 - Atu5176 0.34 -1.5 172,694 - Atu5176 0.34 +0.5 172,766 + Atu5176 0.40 -0.2 172,835 + Atu5176 0.45 +0.3 172,862 + Atu5176 0.47 +1.6 172,994 - Atu5176 0.57 +1.5 172,999 + Atu5176 0.57 -0.1 172,999 - Atu5176 0.57 +0.5 173,025 + Atu5176 0.59 -0.0 173,033 - Atu5176 0.60 +0.6 173,033 - Atu5176 0.60 +2.7 173,033 - Atu5176 0.60 +0.7 173,042 - Atu5176 0.60 +2.1 173,092 - Atu5176 0.64 +0.3 173,143 - Atu5176 0.68 -0.3
Or see this region's nucleotide sequence