Strain Fitness in Agrobacterium fabrum C58 around Atu5043

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5042 and Atu5043 are separated by 100 nucleotidesAtu5043 and Atu5044 are separated by 48 nucleotides Atu5042: Atu5042 - recombinase, at 42,278 to 43,795 Atu5042 Atu5043: Atu5043 - hypothetical protein, at 43,896 to 44,303 Atu5043 Atu5044: Atu5044 - hypothetical protein, at 44,352 to 45,479 Atu5044 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2at 42.920 kb on - strand, within Atu5042at 42.937 kb on - strand, within Atu5042at 43.016 kb on - strand, within Atu5042at 43.019 kb on + strand, within Atu5042at 43.019 kb on + strand, within Atu5042at 43.025 kb on - strand, within Atu5042at 43.069 kb on - strand, within Atu5042at 43.233 kb on + strand, within Atu5042at 43.309 kb on + strand, within Atu5042at 43.317 kb on - strand, within Atu5042at 43.317 kb on - strand, within Atu5042at 43.329 kb on + strand, within Atu5042at 43.366 kb on - strand, within Atu5042at 43.473 kb on + strand, within Atu5042at 43.473 kb on + strand, within Atu5042at 43.494 kb on - strand, within Atu5042at 43.508 kb on + strand, within Atu5042at 43.508 kb on + strand, within Atu5042at 43.508 kb on - strand, within Atu5042at 43.602 kb on + strand, within Atu5042at 43.709 kb on + strandat 43.856 kb on - strandat 43.975 kb on - strand, within Atu5043at 44.030 kb on + strand, within Atu5043at 44.068 kb on + strand, within Atu5043at 44.122 kb on - strand, within Atu5043at 44.160 kb on + strand, within Atu5043at 44.186 kb on - strand, within Atu5043at 44.266 kb on + strandat 44.274 kb on - strandat 44.322 kb on - strandat 44.330 kb on - strandat 44.368 kb on + strandat 44.387 kb on - strandat 44.435 kb on - strandat 44.435 kb on - strandat 44.445 kb on - strandat 44.588 kb on + strand, within Atu5044at 44.611 kb on + strand, within Atu5044at 44.623 kb on - strand, within Atu5044at 44.624 kb on - strand, within Atu5044at 44.656 kb on + strand, within Atu5044at 44.702 kb on + strand, within Atu5044at 44.711 kb on - strand, within Atu5044at 44.722 kb on + strand, within Atu5044at 44.722 kb on + strand, within Atu5044at 44.730 kb on - strand, within Atu5044at 44.754 kb on + strand, within Atu5044at 44.811 kb on - strand, within Atu5044at 44.815 kb on + strand, within Atu5044at 44.820 kb on + strand, within Atu5044at 44.842 kb on - strand, within Atu5044at 44.872 kb on - strand, within Atu5044at 44.925 kb on - strand, within Atu5044at 44.943 kb on - strand, within Atu5044at 44.976 kb on + strand, within Atu5044at 45.031 kb on - strand, within Atu5044at 45.069 kb on + strand, within Atu5044at 45.072 kb on - strand, within Atu5044at 45.097 kb on + strand, within Atu5044at 45.097 kb on + strand, within Atu5044at 45.105 kb on - strand, within Atu5044at 45.105 kb on - strand, within Atu5044at 45.105 kb on - strand, within Atu5044at 45.114 kb on + strand, within Atu5044at 45.131 kb on - strand, within Atu5044at 45.138 kb on - strand, within Atu5044at 45.142 kb on + strand, within Atu5044at 45.220 kb on + strand, within Atu5044at 45.220 kb on + strand, within Atu5044at 45.228 kb on - strand, within Atu5044at 45.228 kb on - strand, within Atu5044at 45.228 kb on - strand, within Atu5044at 45.256 kb on + strand, within Atu5044at 45.274 kb on - strand, within Atu5044at 45.279 kb on + strand, within Atu5044at 45.284 kb on + strand, within Atu5044at 45.292 kb on - strand, within Atu5044at 45.303 kb on + strand, within Atu5044at 45.303 kb on - strand, within Atu5044

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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42,920 - Atu5042 0.42 -0.1
42,937 - Atu5042 0.43 -0.3
43,016 - Atu5042 0.49 +1.7
43,019 + Atu5042 0.49 -1.6
43,019 + Atu5042 0.49 -0.3
43,025 - Atu5042 0.49 +0.0
43,069 - Atu5042 0.52 +1.4
43,233 + Atu5042 0.63 +0.1
43,309 + Atu5042 0.68 -0.2
43,317 - Atu5042 0.68 -0.0
43,317 - Atu5042 0.68 -1.8
43,329 + Atu5042 0.69 +1.1
43,366 - Atu5042 0.72 +2.7
43,473 + Atu5042 0.79 -0.9
43,473 + Atu5042 0.79 +0.3
43,494 - Atu5042 0.80 +1.3
43,508 + Atu5042 0.81 -0.2
43,508 + Atu5042 0.81 -1.9
43,508 - Atu5042 0.81 +0.1
43,602 + Atu5042 0.87 -1.0
43,709 + +0.5
43,856 - +0.3
43,975 - Atu5043 0.19 -0.7
44,030 + Atu5043 0.33 +0.0
44,068 + Atu5043 0.42 +0.1
44,122 - Atu5043 0.55 -0.9
44,160 + Atu5043 0.65 -0.8
44,186 - Atu5043 0.71 +0.4
44,266 + -0.3
44,274 - +0.3
44,322 - -0.5
44,330 - -0.7
44,368 + -0.0
44,387 - -0.3
44,435 - -0.3
44,435 - +0.2
44,445 - -0.8
44,588 + Atu5044 0.21 +0.1
44,611 + Atu5044 0.23 -0.6
44,623 - Atu5044 0.24 -0.2
44,624 - Atu5044 0.24 -0.3
44,656 + Atu5044 0.27 +1.2
44,702 + Atu5044 0.31 -0.8
44,711 - Atu5044 0.32 +0.7
44,722 + Atu5044 0.33 +0.2
44,722 + Atu5044 0.33 +0.2
44,730 - Atu5044 0.34 +0.9
44,754 + Atu5044 0.36 -1.9
44,811 - Atu5044 0.41 +0.2
44,815 + Atu5044 0.41 +2.7
44,820 + Atu5044 0.41 -0.7
44,842 - Atu5044 0.43 +0.6
44,872 - Atu5044 0.46 +2.7
44,925 - Atu5044 0.51 +0.0
44,943 - Atu5044 0.52 -2.2
44,976 + Atu5044 0.55 -1.8
45,031 - Atu5044 0.60 +0.1
45,069 + Atu5044 0.64 +1.5
45,072 - Atu5044 0.64 +0.3
45,097 + Atu5044 0.66 +0.5
45,097 + Atu5044 0.66 +0.7
45,105 - Atu5044 0.67 +0.8
45,105 - Atu5044 0.67 -1.4
45,105 - Atu5044 0.67 +1.1
45,114 + Atu5044 0.68 -0.5
45,131 - Atu5044 0.69 +0.1
45,138 - Atu5044 0.70 +1.7
45,142 + Atu5044 0.70 -0.3
45,220 + Atu5044 0.77 +0.8
45,220 + Atu5044 0.77 +1.1
45,228 - Atu5044 0.78 +1.0
45,228 - Atu5044 0.78 +2.7
45,228 - Atu5044 0.78 +2.3
45,256 + Atu5044 0.80 +0.4
45,274 - Atu5044 0.82 -0.3
45,279 + Atu5044 0.82 -0.2
45,284 + Atu5044 0.83 +2.7
45,292 - Atu5044 0.83 -1.0
45,303 + Atu5044 0.84 +0.2
45,303 - Atu5044 0.84 -0.1

Or see this region's nucleotide sequence