Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3765 and Atu3766 are separated by 99 nucleotides Atu3766 and Atu3767 overlap by 4 nucleotides Atu3767 and Atu3768 are separated by 259 nucleotides
Atu3765: Atu3765 - oligoendopeptidase F, at 846,553 to 848,403
Atu3765
Atu3766: Atu3766 - hypothetical protein, at 848,503 to 849,138
Atu3766
Atu3767: Atu3767 - diguanylate cyclase, at 849,135 to 850,043
Atu3767
Atu3768: Atu3768 - homospermidine synthase, at 850,303 to 851,748
Atu3768
Position (kb) 849
850
851 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 848.166 kb on + strand, within Atu3765 at 848.280 kb on + strand at 848.282 kb on + strand at 848.397 kb on + strand at 848.405 kb on - strand at 848.422 kb on - strand at 848.479 kb on - strand at 848.479 kb on - strand at 848.489 kb on + strand at 848.507 kb on - strand at 848.524 kb on - strand at 848.604 kb on - strand, within Atu3766 at 848.632 kb on + strand, within Atu3766 at 848.650 kb on - strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.687 kb on + strand, within Atu3766 at 848.698 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.706 kb on + strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.714 kb on - strand, within Atu3766 at 848.847 kb on + strand, within Atu3766 at 848.887 kb on + strand, within Atu3766 at 848.901 kb on - strand, within Atu3766 at 848.983 kb on + strand, within Atu3766 at 848.991 kb on - strand, within Atu3766 at 849.007 kb on + strand, within Atu3766 at 849.018 kb on - strand, within Atu3766 at 849.022 kb on + strand, within Atu3766 at 849.030 kb on - strand, within Atu3766 at 849.120 kb on - strand at 849.142 kb on - strand at 849.268 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.675 kb on - strand, within Atu3767 at 849.733 kb on - strand, within Atu3767 at 849.750 kb on - strand, within Atu3767 at 849.815 kb on - strand, within Atu3767 at 849.857 kb on - strand, within Atu3767 at 849.992 kb on + strand at 849.995 kb on + strand at 850.090 kb on + strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.197 kb on - strand at 850.375 kb on - strand at 850.385 kb on + strand at 850.491 kb on + strand, within Atu3768 at 850.501 kb on + strand, within Atu3768 at 850.509 kb on - strand, within Atu3768 at 850.520 kb on + strand, within Atu3768 at 850.526 kb on - strand, within Atu3768 at 850.542 kb on + strand, within Atu3768 at 850.542 kb on + strand, within Atu3768 at 850.550 kb on - strand, within Atu3768 at 850.552 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.557 kb on + strand, within Atu3768 at 850.565 kb on - strand, within Atu3768 at 850.565 kb on - strand, within Atu3768 at 850.571 kb on - strand, within Atu3768 at 850.745 kb on + strand, within Atu3768 at 850.782 kb on - strand, within Atu3768 at 850.804 kb on + strand, within Atu3768 at 850.812 kb on - strand, within Atu3768 at 850.830 kb on + strand, within Atu3768 at 850.838 kb on - strand, within Atu3768 at 850.895 kb on + strand, within Atu3768 at 850.903 kb on - strand, within Atu3768 at 850.920 kb on + strand, within Atu3768 at 850.920 kb on + strand, within Atu3768 at 850.944 kb on + strand, within Atu3768 at 850.976 kb on - strand, within Atu3768 at 851.003 kb on - strand, within Atu3768
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 848,166 + Atu3765 0.87 +1.0 848,280 + -0.6 848,282 + +0.1 848,397 + -0.2 848,405 - -0.1 848,422 - +0.4 848,479 - +0.3 848,479 - +0.1 848,489 + -0.0 848,507 - +0.1 848,524 - +0.7 848,604 - Atu3766 0.16 +2.6 848,632 + Atu3766 0.20 -0.0 848,650 - Atu3766 0.23 -0.6 848,687 + Atu3766 0.29 -1.0 848,687 + Atu3766 0.29 +0.4 848,687 + Atu3766 0.29 +1.4 848,687 + Atu3766 0.29 +0.0 848,698 + Atu3766 0.31 +0.2 848,706 + Atu3766 0.32 +0.3 848,706 + Atu3766 0.32 +3.6 848,714 - Atu3766 0.33 -0.3 848,714 - Atu3766 0.33 +0.4 848,847 + Atu3766 0.54 +0.3 848,887 + Atu3766 0.60 +0.1 848,901 - Atu3766 0.63 -0.0 848,983 + Atu3766 0.75 -0.1 848,991 - Atu3766 0.77 +0.0 849,007 + Atu3766 0.79 -0.5 849,018 - Atu3766 0.81 -0.0 849,022 + Atu3766 0.82 +1.0 849,030 - Atu3766 0.83 -0.3 849,120 - +0.2 849,142 - +0.1 849,268 - Atu3767 0.15 -0.5 849,675 - Atu3767 0.59 -0.2 849,675 - Atu3767 0.59 -0.4 849,733 - Atu3767 0.66 +0.1 849,750 - Atu3767 0.68 -2.1 849,815 - Atu3767 0.75 -0.3 849,857 - Atu3767 0.79 -1.6 849,992 + -0.7 849,995 + +0.7 850,090 + +0.6 850,197 - +0.2 850,197 - +0.6 850,197 - -0.2 850,197 - -0.8 850,375 - -0.1 850,385 + -1.2 850,491 + Atu3768 0.13 -0.4 850,501 + Atu3768 0.14 +0.1 850,509 - Atu3768 0.14 -1.6 850,520 + Atu3768 0.15 -0.1 850,526 - Atu3768 0.15 +0.1 850,542 + Atu3768 0.17 +0.9 850,542 + Atu3768 0.17 +0.3 850,550 - Atu3768 0.17 -0.9 850,552 + Atu3768 0.17 -0.0 850,557 + Atu3768 0.18 -0.0 850,557 + Atu3768 0.18 -0.4 850,557 + Atu3768 0.18 -0.5 850,557 + Atu3768 0.18 +0.6 850,565 - Atu3768 0.18 -0.5 850,565 - Atu3768 0.18 -0.0 850,571 - Atu3768 0.19 +0.3 850,745 + Atu3768 0.31 +0.1 850,782 - Atu3768 0.33 -0.4 850,804 + Atu3768 0.35 -0.3 850,812 - Atu3768 0.35 +0.4 850,830 + Atu3768 0.36 -0.3 850,838 - Atu3768 0.37 +0.3 850,895 + Atu3768 0.41 -0.0 850,903 - Atu3768 0.41 -0.6 850,920 + Atu3768 0.43 +0.0 850,920 + Atu3768 0.43 +0.2 850,944 + Atu3768 0.44 -0.6 850,976 - Atu3768 0.47 -0.8 851,003 - Atu3768 0.48 +1.0
Or see this region's nucleotide sequence