Strain Fitness in Agrobacterium fabrum C58 around Atu3375

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3374 and Atu3375 are separated by 127 nucleotidesAtu3375 and Atu3376 overlap by 4 nucleotidesAtu3376 and Atu3377 are separated by 7 nucleotides Atu3374: Atu3374 - amidohydrolase, at 414,936 to 416,378 Atu3374 Atu3375: Atu3375 - peptide ABC transporter substrate-binding protein, at 416,506 to 418,083 Atu3375 Atu3376: Atu3376 - beta-lactamase, at 418,080 to 418,928 Atu3376 Atu3377: Atu3377 - peptide ABC transporter ATPase, at 418,936 to 420,570 Atu3377 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -1 0 1 2at 415.512 kb on - strand, within Atu3374at 415.559 kb on - strand, within Atu3374at 415.572 kb on - strand, within Atu3374at 415.728 kb on - strand, within Atu3374at 415.738 kb on + strand, within Atu3374at 415.776 kb on + strand, within Atu3374at 415.834 kb on + strand, within Atu3374at 415.846 kb on + strand, within Atu3374at 415.848 kb on + strand, within Atu3374at 415.856 kb on - strand, within Atu3374at 415.856 kb on - strand, within Atu3374at 415.877 kb on - strand, within Atu3374at 415.959 kb on - strand, within Atu3374at 415.974 kb on - strand, within Atu3374at 415.976 kb on + strand, within Atu3374at 415.977 kb on - strand, within Atu3374at 415.984 kb on - strand, within Atu3374at 415.985 kb on - strand, within Atu3374at 416.066 kb on + strand, within Atu3374at 416.108 kb on + strand, within Atu3374at 416.160 kb on + strand, within Atu3374at 416.299 kb on - strandat 416.321 kb on + strandat 416.378 kb on + strandat 416.381 kb on - strandat 416.381 kb on - strandat 416.392 kb on - strandat 416.392 kb on - strandat 416.396 kb on - strandat 416.401 kb on - strandat 416.408 kb on - strandat 416.408 kb on - strandat 416.533 kb on - strandat 416.561 kb on + strandat 416.696 kb on + strand, within Atu3375at 416.704 kb on - strand, within Atu3375at 416.704 kb on - strand, within Atu3375at 416.704 kb on - strand, within Atu3375at 416.715 kb on + strand, within Atu3375at 416.734 kb on - strand, within Atu3375at 416.751 kb on - strand, within Atu3375at 416.776 kb on + strand, within Atu3375at 416.784 kb on - strand, within Atu3375at 416.784 kb on - strand, within Atu3375at 416.809 kb on - strand, within Atu3375at 416.858 kb on + strand, within Atu3375at 416.911 kb on - strand, within Atu3375at 416.911 kb on - strand, within Atu3375at 416.935 kb on + strand, within Atu3375at 417.054 kb on + strand, within Atu3375at 417.062 kb on - strand, within Atu3375at 417.073 kb on - strand, within Atu3375at 417.178 kb on + strand, within Atu3375at 417.335 kb on + strand, within Atu3375at 417.392 kb on - strand, within Atu3375at 417.401 kb on + strand, within Atu3375at 417.500 kb on + strand, within Atu3375at 417.622 kb on + strand, within Atu3375at 417.656 kb on + strand, within Atu3375at 417.671 kb on + strand, within Atu3375at 417.671 kb on + strand, within Atu3375at 417.679 kb on - strand, within Atu3375at 417.750 kb on + strand, within Atu3375at 417.750 kb on + strand, within Atu3375at 417.763 kb on - strand, within Atu3375at 417.817 kb on + strand, within Atu3375at 417.882 kb on - strand, within Atu3375at 417.897 kb on - strand, within Atu3375at 417.901 kb on - strand, within Atu3375at 417.950 kb on + strandat 417.960 kb on + strandat 418.052 kb on + strandat 418.052 kb on + strandat 418.060 kb on - strandat 418.060 kb on - strandat 418.060 kb on - strandat 418.060 kb on - strandat 418.085 kb on + strandat 418.085 kb on + strandat 418.085 kb on + strandat 418.085 kb on + strandat 418.085 kb on + strandat 418.085 kb on + strandat 418.093 kb on - strandat 418.106 kb on - strandat 418.186 kb on + strand, within Atu3376at 418.186 kb on + strand, within Atu3376at 418.249 kb on - strand, within Atu3376at 418.264 kb on - strand, within Atu3376at 418.378 kb on + strand, within Atu3376at 418.404 kb on - strand, within Atu3376at 418.475 kb on - strand, within Atu3376at 418.576 kb on - strand, within Atu3376at 418.578 kb on + strand, within Atu3376at 418.586 kb on - strand, within Atu3376at 418.621 kb on - strand, within Atu3376at 418.661 kb on + strand, within Atu3376at 418.709 kb on + strand, within Atu3376at 418.756 kb on + strand, within Atu3376at 418.842 kb on + strand, within Atu3376at 418.850 kb on - strandat 418.886 kb on - strandat 418.905 kb on - strandat 419.034 kb on + strandat 419.034 kb on + strandat 419.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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415,512 - Atu3374 0.40 +0.2
415,559 - Atu3374 0.43 -1.5
415,572 - Atu3374 0.44 +0.1
415,728 - Atu3374 0.55 -0.4
415,738 + Atu3374 0.56 +0.1
415,776 + Atu3374 0.58 -0.1
415,834 + Atu3374 0.62 -1.0
415,846 + Atu3374 0.63 +0.5
415,848 + Atu3374 0.63 -0.1
415,856 - Atu3374 0.64 +0.0
415,856 - Atu3374 0.64 -0.1
415,877 - Atu3374 0.65 +0.2
415,959 - Atu3374 0.71 -0.0
415,974 - Atu3374 0.72 +0.3
415,976 + Atu3374 0.72 -0.0
415,977 - Atu3374 0.72 +0.1
415,984 - Atu3374 0.73 +0.2
415,985 - Atu3374 0.73 +0.2
416,066 + Atu3374 0.78 +0.3
416,108 + Atu3374 0.81 -0.6
416,160 + Atu3374 0.85 +0.4
416,299 - -0.1
416,321 + +0.1
416,378 + -0.6
416,381 - -0.5
416,381 - +0.5
416,392 - +0.2
416,392 - +0.9
416,396 - +0.8
416,401 - -0.2
416,408 - -0.6
416,408 - +0.4
416,533 - +0.6
416,561 + -0.1
416,696 + Atu3375 0.12 +0.3
416,704 - Atu3375 0.13 +0.2
416,704 - Atu3375 0.13 +0.1
416,704 - Atu3375 0.13 +0.3
416,715 + Atu3375 0.13 +0.5
416,734 - Atu3375 0.14 +0.6
416,751 - Atu3375 0.16 -0.2
416,776 + Atu3375 0.17 +0.1
416,784 - Atu3375 0.18 +1.0
416,784 - Atu3375 0.18 -0.1
416,809 - Atu3375 0.19 +0.6
416,858 + Atu3375 0.22 -0.2
416,911 - Atu3375 0.26 -0.0
416,911 - Atu3375 0.26 -0.0
416,935 + Atu3375 0.27 +0.6
417,054 + Atu3375 0.35 +1.0
417,062 - Atu3375 0.35 +0.1
417,073 - Atu3375 0.36 +1.3
417,178 + Atu3375 0.43 -0.0
417,335 + Atu3375 0.53 +1.6
417,392 - Atu3375 0.56 +0.9
417,401 + Atu3375 0.57 +0.4
417,500 + Atu3375 0.63 +0.4
417,622 + Atu3375 0.71 -0.3
417,656 + Atu3375 0.73 -0.3
417,671 + Atu3375 0.74 +1.9
417,671 + Atu3375 0.74 -0.0
417,679 - Atu3375 0.74 +0.4
417,750 + Atu3375 0.79 -0.1
417,750 + Atu3375 0.79 -0.5
417,763 - Atu3375 0.80 +0.0
417,817 + Atu3375 0.83 +1.3
417,882 - Atu3375 0.87 -1.5
417,897 - Atu3375 0.88 +0.7
417,901 - Atu3375 0.88 +0.9
417,950 + -0.1
417,960 + +0.2
418,052 + +0.0
418,052 + -0.1
418,060 - -1.0
418,060 - -0.1
418,060 - -0.4
418,060 - -0.4
418,085 + +1.3
418,085 + +0.0
418,085 + +0.9
418,085 + +0.3
418,085 + +0.2
418,085 + +0.4
418,093 - +0.1
418,106 - +0.3
418,186 + Atu3376 0.12 -0.5
418,186 + Atu3376 0.12 +0.1
418,249 - Atu3376 0.20 -0.4
418,264 - Atu3376 0.22 -0.2
418,378 + Atu3376 0.35 +0.4
418,404 - Atu3376 0.38 +0.7
418,475 - Atu3376 0.47 -0.2
418,576 - Atu3376 0.58 +0.2
418,578 + Atu3376 0.59 +0.9
418,586 - Atu3376 0.60 -0.1
418,621 - Atu3376 0.64 -0.2
418,661 + Atu3376 0.68 +0.5
418,709 + Atu3376 0.74 +0.5
418,756 + Atu3376 0.80 +1.1
418,842 + Atu3376 0.90 -0.0
418,850 - +0.9
418,886 - +0.5
418,905 - +0.1
419,034 + +0.2
419,034 + +0.2
419,042 - +0.2

Or see this region's nucleotide sequence