Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3314 and Atu3315 overlap by 4 nucleotides Atu3315 and Atu3316 are separated by 1 nucleotides
Atu3314: Atu3314 - cellulose synthase, at 344,599 to 346,536
Atu3314
Atu3315: Atu3315 - UDP-glucose 4-epimerase, at 346,533 to 347,516
Atu3315
Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540
Atu3316
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 345.637 kb on + strand, within Atu3314 at 345.653 kb on - strand, within Atu3314 at 345.669 kb on + strand, within Atu3314 at 345.683 kb on + strand, within Atu3314 at 345.695 kb on + strand, within Atu3314 at 345.701 kb on + strand, within Atu3314 at 345.815 kb on + strand, within Atu3314 at 345.820 kb on + strand, within Atu3314 at 345.820 kb on + strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.889 kb on - strand, within Atu3314 at 345.940 kb on - strand, within Atu3314 at 345.968 kb on + strand, within Atu3314 at 345.992 kb on + strand, within Atu3314 at 346.090 kb on + strand, within Atu3314 at 346.091 kb on - strand, within Atu3314 at 346.100 kb on - strand, within Atu3314 at 346.100 kb on - strand, within Atu3314 at 346.102 kb on + strand, within Atu3314 at 346.160 kb on + strand, within Atu3314 at 346.160 kb on + strand, within Atu3314 at 346.185 kb on - strand, within Atu3314 at 346.188 kb on + strand, within Atu3314 at 346.196 kb on - strand, within Atu3314 at 346.197 kb on - strand, within Atu3314 at 346.228 kb on - strand, within Atu3314 at 346.237 kb on - strand, within Atu3314 at 346.265 kb on + strand, within Atu3314 at 346.302 kb on + strand, within Atu3314 at 346.313 kb on + strand, within Atu3314 at 346.321 kb on - strand, within Atu3314 at 346.403 kb on - strand at 346.404 kb on - strand at 346.539 kb on - strand at 346.625 kb on - strand at 346.625 kb on - strand at 346.630 kb on + strand at 346.632 kb on + strand, within Atu3315 at 346.829 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 347.055 kb on - strand, within Atu3315 at 347.098 kb on - strand, within Atu3315 at 347.195 kb on + strand, within Atu3315 at 347.286 kb on - strand, within Atu3315 at 347.308 kb on - strand, within Atu3315 at 347.466 kb on - strand at 347.519 kb on + strand at 347.665 kb on + strand, within Atu3316 at 347.783 kb on - strand, within Atu3316 at 347.795 kb on - strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 348.001 kb on - strand, within Atu3316 at 348.144 kb on + strand, within Atu3316 at 348.152 kb on - strand, within Atu3316 at 348.213 kb on - strand, within Atu3316 at 348.238 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 345,637 + Atu3314 0.54 +0.2 345,653 - Atu3314 0.54 +0.4 345,669 + Atu3314 0.55 -1.7 345,683 + Atu3314 0.56 -0.0 345,695 + Atu3314 0.57 -1.0 345,701 + Atu3314 0.57 -0.1 345,815 + Atu3314 0.63 +0.6 345,820 + Atu3314 0.63 +0.3 345,820 + Atu3314 0.63 -0.2 345,828 - Atu3314 0.63 -0.2 345,828 - Atu3314 0.63 -0.3 345,828 - Atu3314 0.63 +0.1 345,828 - Atu3314 0.63 +0.3 345,889 - Atu3314 0.67 +0.2 345,940 - Atu3314 0.69 +0.6 345,968 + Atu3314 0.71 +0.1 345,992 + Atu3314 0.72 +0.3 346,090 + Atu3314 0.77 -0.3 346,091 - Atu3314 0.77 +0.2 346,100 - Atu3314 0.77 -1.0 346,100 - Atu3314 0.77 +0.5 346,102 + Atu3314 0.78 -0.5 346,160 + Atu3314 0.81 +0.4 346,160 + Atu3314 0.81 -0.5 346,185 - Atu3314 0.82 -0.0 346,188 + Atu3314 0.82 -0.1 346,196 - Atu3314 0.82 +0.8 346,197 - Atu3314 0.82 +0.3 346,228 - Atu3314 0.84 +0.0 346,237 - Atu3314 0.85 +0.2 346,265 + Atu3314 0.86 -0.3 346,302 + Atu3314 0.88 +0.2 346,313 + Atu3314 0.88 -0.5 346,321 - Atu3314 0.89 -0.5 346,403 - +0.4 346,404 - -2.6 346,539 - -0.4 346,625 - +0.3 346,625 - +0.2 346,630 + -0.0 346,632 + Atu3315 0.10 +0.1 346,829 + Atu3315 0.30 -2.0 346,950 + Atu3315 0.42 -0.6 347,055 - Atu3315 0.53 -1.0 347,098 - Atu3315 0.57 -0.2 347,195 + Atu3315 0.67 +1.3 347,286 - Atu3315 0.77 -1.0 347,308 - Atu3315 0.79 -0.8 347,466 - -0.4 347,519 + -0.9 347,665 + Atu3316 0.14 -0.0 347,783 - Atu3316 0.26 -0.0 347,795 - Atu3316 0.27 -0.5 347,949 + Atu3316 0.42 -0.2 347,949 + Atu3316 0.42 +0.1 347,957 - Atu3316 0.43 -0.0 347,957 - Atu3316 0.43 +0.3 348,001 - Atu3316 0.47 +0.6 348,144 + Atu3316 0.61 -0.4 348,152 - Atu3316 0.62 +0.1 348,213 - Atu3316 0.68 +0.6 348,238 + Atu3316 0.70 -0.1 348,289 + Atu3316 0.75 -0.1 348,289 + Atu3316 0.75 +0.2 348,499 - -0.2
Or see this region's nucleotide sequence