Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3020 and Atu3021 are separated by 30 nucleotides Atu3021 and Atu3022 overlap by 4 nucleotides Atu3022 and Atu3023 are separated by 11 nucleotides
Atu3020: Atu3020 - GntR family transcriptional regulator, at 12,671 to 13,381
Atu3020
Atu3021: Atu3021 - sugar ABC transporter ATPase, at 13,412 to 14,527
Atu3021
Atu3022: Atu3022 - sugar ABC transporter permease, at 14,524 to 15,453
Atu3022
Atu3023: Atu3023 - sugar ABC transporter permease, at 15,465 to 16,346
Atu3023
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.476 kb on + strand at 12.483 kb on + strand at 12.483 kb on + strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.497 kb on + strand at 12.785 kb on + strand, within Atu3020 at 12.815 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.984 kb on + strand, within Atu3020 at 13.103 kb on + strand, within Atu3020 at 13.303 kb on + strand, within Atu3020 at 13.303 kb on + strand, within Atu3020 at 13.383 kb on - strand at 13.400 kb on - strand at 13.421 kb on + strand at 13.473 kb on + strand at 13.545 kb on - strand, within Atu3021 at 13.547 kb on - strand, within Atu3021 at 13.659 kb on + strand, within Atu3021 at 13.665 kb on - strand, within Atu3021 at 13.667 kb on + strand, within Atu3021 at 13.671 kb on + strand, within Atu3021 at 13.722 kb on - strand, within Atu3021 at 13.838 kb on + strand, within Atu3021 at 13.846 kb on - strand, within Atu3021 at 13.920 kb on + strand, within Atu3021 at 13.990 kb on - strand, within Atu3021 at 14.051 kb on - strand, within Atu3021 at 14.061 kb on - strand, within Atu3021 at 14.158 kb on + strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.200 kb on + strand, within Atu3021 at 14.221 kb on - strand, within Atu3021 at 14.221 kb on - strand, within Atu3021 at 14.493 kb on - strand at 14.509 kb on + strand at 14.563 kb on - strand at 14.655 kb on + strand, within Atu3022 at 14.794 kb on + strand, within Atu3022 at 14.794 kb on + strand, within Atu3022 at 14.800 kb on + strand, within Atu3022 at 14.800 kb on + strand, within Atu3022 at 14.848 kb on + strand, within Atu3022 at 14.856 kb on - strand, within Atu3022 at 14.861 kb on - strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.866 kb on - strand, within Atu3022 at 14.869 kb on - strand, within Atu3022 at 14.871 kb on - strand, within Atu3022 at 14.871 kb on - strand, within Atu3022 at 14.919 kb on - strand, within Atu3022 at 14.990 kb on + strand, within Atu3022 at 15.055 kb on + strand, within Atu3022 at 15.158 kb on + strand, within Atu3022 at 15.158 kb on + strand, within Atu3022 at 15.183 kb on + strand, within Atu3022 at 15.191 kb on - strand, within Atu3022 at 15.283 kb on + strand, within Atu3022 at 15.336 kb on + strand, within Atu3022 at 15.351 kb on - strand, within Atu3022 at 15.362 kb on + strand at 15.367 kb on + strand at 15.370 kb on - strand at 15.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 12,476 + -0.1 12,483 + -0.5 12,483 + +0.3 12,491 - -1.3 12,491 - +0.1 12,491 - -0.9 12,497 + +0.4 12,785 + Atu3020 0.16 -0.4 12,815 + Atu3020 0.20 -0.6 12,970 + Atu3020 0.42 -0.4 12,970 + Atu3020 0.42 -0.5 12,970 + Atu3020 0.42 -0.7 12,970 + Atu3020 0.42 +0.1 12,970 + Atu3020 0.42 -1.0 12,970 + Atu3020 0.42 -0.7 12,984 + Atu3020 0.44 -0.2 13,103 + Atu3020 0.61 -0.3 13,303 + Atu3020 0.89 -0.6 13,303 + Atu3020 0.89 -0.7 13,383 - +0.6 13,400 - -0.5 13,421 + -0.3 13,473 + -1.0 13,545 - Atu3021 0.12 -0.7 13,547 - Atu3021 0.12 +0.2 13,659 + Atu3021 0.22 -0.4 13,665 - Atu3021 0.23 -0.6 13,667 + Atu3021 0.23 -1.0 13,671 + Atu3021 0.23 -0.4 13,722 - Atu3021 0.28 -1.1 13,838 + Atu3021 0.38 +0.8 13,846 - Atu3021 0.39 -1.4 13,920 + Atu3021 0.46 -0.2 13,990 - Atu3021 0.52 -0.4 14,051 - Atu3021 0.57 -0.1 14,061 - Atu3021 0.58 -0.9 14,158 + Atu3021 0.67 -0.4 14,198 - Atu3021 0.70 -0.8 14,198 - Atu3021 0.70 -0.7 14,200 + Atu3021 0.71 -1.9 14,221 - Atu3021 0.72 -0.6 14,221 - Atu3021 0.72 -1.0 14,493 - +0.4 14,509 + -0.2 14,563 - -0.2 14,655 + Atu3022 0.14 -0.3 14,794 + Atu3022 0.29 -1.3 14,794 + Atu3022 0.29 -2.4 14,800 + Atu3022 0.30 -0.3 14,800 + Atu3022 0.30 -0.5 14,848 + Atu3022 0.35 -0.7 14,856 - Atu3022 0.36 +0.9 14,861 - Atu3022 0.36 -2.9 14,863 + Atu3022 0.36 -0.5 14,863 + Atu3022 0.36 -0.2 14,863 + Atu3022 0.36 -0.5 14,866 - Atu3022 0.37 -1.3 14,869 - Atu3022 0.37 -0.3 14,871 - Atu3022 0.37 -0.9 14,871 - Atu3022 0.37 +0.2 14,919 - Atu3022 0.42 +0.1 14,990 + Atu3022 0.50 -0.1 15,055 + Atu3022 0.57 +1.2 15,158 + Atu3022 0.68 -1.4 15,158 + Atu3022 0.68 -0.6 15,183 + Atu3022 0.71 -0.4 15,191 - Atu3022 0.72 -0.7 15,283 + Atu3022 0.82 +0.2 15,336 + Atu3022 0.87 +0.3 15,351 - Atu3022 0.89 -1.1 15,362 + +0.4 15,367 + +0.0 15,370 - -0.3 15,372 + -1.4
Or see this region's nucleotide sequence