Strain Fitness in Agrobacterium fabrum C58 around Atu1248

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,237,236	+				-0.1
1,237,370	-		Atu1248	0.18	-0.2
1,237,372	+		Atu1248	0.18	+0.2
1,237,380	-		Atu1248	0.19	+0.9
1,237,399	+		Atu1248	0.21	-0.0
1,237,399	-		Atu1248	0.21	+0.7
1,237,407	-		Atu1248	0.22	-0.2
1,237,407	-		Atu1248	0.22	+1.3
1,237,412	-		Atu1248	0.23	+0.6
1,237,461	+		Atu1248	0.29	+0.2
1,237,501	-		Atu1248	0.33	+1.9
1,237,514	-		Atu1248	0.35	+0.6
1,237,538	+		Atu1248	0.38	-0.4
1,237,538	+		Atu1248	0.38	+0.7
1,237,538	+		Atu1248	0.38	-0.0
1,237,538	+		Atu1248	0.38	-0.0
1,237,540	+		Atu1248	0.38	-0.0
1,237,546	-		Atu1248	0.39	-0.0
1,237,546	-		Atu1248	0.39	+0.2
1,237,546	-		Atu1248	0.39	-0.0
1,237,548	-		Atu1248	0.39	+0.1
1,237,557	+		Atu1248	0.40	+0.2
1,237,558	+		Atu1248	0.40	+0.4
1,237,590	+		Atu1248	0.44	+0.1
1,237,590	+		Atu1248	0.44	+0.3
1,237,590	+		Atu1248	0.44	+0.3
1,237,590	+		Atu1248	0.44	-0.5
1,237,612	+		Atu1248	0.47	+0.4
1,237,612	+		Atu1248	0.47	+0.2
1,237,719	+		Atu1248	0.59	-0.3
1,237,727	-		Atu1248	0.60	+0.6
1,237,761	+		Atu1248	0.65	-0.2
1,237,787	-		Atu1248	0.68	-0.2
1,237,787	-		Atu1248	0.68	+0.4
1,237,793	+		Atu1248	0.68	+0.5
1,237,793	+		Atu1248	0.68	+1.0
1,237,859	-		Atu1248	0.76	+0.1
1,237,935	-		Atu1248	0.85	-0.4
1,238,010	+				+0.2
1,238,015	+				-2.0
1,238,098	-				-0.6
1,238,246	-				-0.0
1,238,283	-				-0.8
1,238,288	+				-0.4
1,238,307	-				+0.3
1,238,326	+				+1.0
1,238,334	-				-0.0
1,238,395	-				-0.2
1,238,639	+		Atu1249	0.27	+0.3
1,238,644	+		Atu1249	0.29	+0.1
1,238,791	-		Atu1249	0.83	-0.1
1,238,799	-		Atu1249	0.86	+0.3
1,238,893	+				+0.1
1,238,923	+				+0.1
1,238,948	+				+0.2
1,238,955	-				-1.3
1,238,966	+				-0.3
1,238,982	-				+1.3
1,239,019	+		Atu1250	0.13	-0.5
1,239,019	-		Atu1250	0.13	-0.1