Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0909 and Atu0910 overlap by 4 nucleotides Atu0910 and Atu0911 overlap by 1 nucleotides Atu0911 and Atu0912 are separated by 19 nucleotides Atu0912 and Atu0913 overlap by 4 nucleotides Atu0913 and Atu0914 overlap by 4 nucleotides Atu0914 and Atu0915 overlap by 4 nucleotides
Atu0909: Atu0909 - Na+/H+ antiporter, at 898,920 to 901,289
Atu0909
Atu0910: Atu0910 - Na+/H+ antiporter, at 901,286 to 901,705
Atu0910
Atu0911: Atu0911 - Na+/H+ antiporter, at 901,705 to 902,082
Atu0911
Atu0912: Atu0912 - Na+/H+ antiporter, at 902,102 to 903,679
Atu0912
Atu0913: Atu0913 - Na+/H+ antiporter, at 903,676 to 904,155
Atu0913
Atu0914: Atu0914 - Na+/H+ antiporter, at 904,152 to 904,538
Atu0914
Atu0915: Atu0915 - Na+/H+ antiporter, at 904,535 to 904,867
Atu0915
Position (kb) 902
903
904 Strain fitness (log2 ratio) -1
0
1 at 902.039 kb on + strand, within Atu0911 at 902.978 kb on + strand, within Atu0912 at 902.983 kb on + strand, within Atu0912 at 903.620 kb on + strand at 903.637 kb on + strand at 903.639 kb on + strand at 903.639 kb on + strand at 903.645 kb on - strand at 903.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 902,039 + Atu0911 0.88 +0.7 902,978 + Atu0912 0.56 -0.4 902,983 + Atu0912 0.56 -0.1 903,620 + -0.1 903,637 + +0.0 903,639 + -0.8 903,639 + +1.0 903,645 - +0.3 903,674 - -1.0
Or see this region's nucleotide sequence