Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0679 and Atu0680 are separated by 64 nucleotides Atu0680 and Atu0681 are separated by 110 nucleotides Atu0681 and Atu8056 are separated by 208 nucleotides Atu8056 and Atu0682 are separated by 62 nucleotides
Atu0679: Atu0679 - ATP phosphoribosyltransferase, at 673,931 to 674,623
Atu0679
Atu0680: Atu0680 - hypothetical protein, at 674,688 to 675,179
Atu0680
Atu0681: Atu0681 - hypothetical protein, at 675,290 to 675,724
Atu0681
Atu8056: Atu8056 - hypothetical protein, at 675,933 to 676,265
Atu8056
Atu0682: Atu0682 - GroEL chaperonin, at 676,328 to 677,962
Atu0682
Position (kb) 675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 674.387 kb on - strand, within Atu0679 at 674.407 kb on - strand, within Atu0679 at 674.428 kb on + strand, within Atu0679 at 674.473 kb on - strand, within Atu0679 at 674.686 kb on + strand at 674.759 kb on + strand, within Atu0680 at 674.767 kb on - strand, within Atu0680 at 674.767 kb on - strand, within Atu0680 at 674.831 kb on - strand, within Atu0680 at 674.852 kb on + strand, within Atu0680 at 674.970 kb on - strand, within Atu0680 at 674.975 kb on - strand, within Atu0680 at 675.182 kb on - strand at 675.185 kb on + strand at 675.456 kb on + strand, within Atu0681 at 675.464 kb on - strand, within Atu0681 at 675.493 kb on + strand, within Atu0681 at 675.502 kb on + strand, within Atu0681 at 675.522 kb on - strand, within Atu0681 at 675.527 kb on - strand, within Atu0681 at 675.649 kb on + strand, within Atu0681 at 675.659 kb on + strand, within Atu0681 at 675.720 kb on + strand at 675.730 kb on - strand at 675.735 kb on - strand at 675.817 kb on - strand at 676.123 kb on + strand, within Atu8056 at 676.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 674,387 - Atu0679 0.66 +2.0 674,407 - Atu0679 0.69 +1.3 674,428 + Atu0679 0.72 +0.2 674,473 - Atu0679 0.78 -0.3 674,686 + -0.3 674,759 + Atu0680 0.14 -0.3 674,767 - Atu0680 0.16 +1.5 674,767 - Atu0680 0.16 -0.3 674,831 - Atu0680 0.29 -0.5 674,852 + Atu0680 0.33 +0.0 674,970 - Atu0680 0.57 +0.0 674,975 - Atu0680 0.58 +0.2 675,182 - +0.2 675,185 + -0.1 675,456 + Atu0681 0.38 +0.5 675,464 - Atu0681 0.40 +0.2 675,493 + Atu0681 0.47 -2.3 675,502 + Atu0681 0.49 -0.8 675,522 - Atu0681 0.53 +0.3 675,527 - Atu0681 0.54 -1.1 675,649 + Atu0681 0.83 +0.3 675,659 + Atu0681 0.85 -1.2 675,720 + -0.3 675,730 - +0.5 675,735 - -0.2 675,817 - -0.4 676,123 + Atu8056 0.57 +0.2 676,321 + -0.4
Or see this region's nucleotide sequence