Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0552 and Atu0553 are separated by 18 nucleotides Atu0553 and Atu0554 overlap by 4 nucleotides Atu0554 and Atu0555 are separated by 3 nucleotides Atu0555 and Atu0556 are separated by 170 nucleotides
Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705
Atu0552
Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062
Atu0553
Atu0554: Atu0554 - flagellar basal-body rod protein, at 541,059 to 541,478
Atu0554
Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874
Atu0555
Atu0556: Atu0556 - hypothetical protein, at 542,045 to 542,449
Atu0556
Position (kb) 541
542 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 540.059 kb on + strand, within Atu0552 at 540.243 kb on - strand, within Atu0552 at 540.265 kb on - strand, within Atu0552 at 540.369 kb on + strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.417 kb on + strand, within Atu0552 at 540.461 kb on + strand, within Atu0552 at 540.467 kb on - strand, within Atu0552 at 540.541 kb on + strand, within Atu0552 at 540.583 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.625 kb on - strand, within Atu0552 at 540.648 kb on + strand at 540.698 kb on + strand at 540.722 kb on + strand at 540.724 kb on - strand at 540.744 kb on + strand at 540.744 kb on + strand at 540.865 kb on - strand, within Atu0553 at 540.938 kb on + strand, within Atu0553 at 540.942 kb on - strand, within Atu0553 at 540.951 kb on + strand, within Atu0553 at 540.964 kb on - strand, within Atu0553 at 540.972 kb on - strand, within Atu0553 at 540.994 kb on - strand, within Atu0553 at 541.037 kb on - strand at 541.119 kb on + strand, within Atu0554 at 541.300 kb on + strand, within Atu0554 at 541.316 kb on + strand, within Atu0554 at 541.319 kb on - strand, within Atu0554 at 541.347 kb on + strand, within Atu0554 at 541.360 kb on - strand, within Atu0554 at 541.417 kb on + strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.425 kb on - strand, within Atu0554 at 541.487 kb on + strand at 541.519 kb on + strand at 541.536 kb on - strand, within Atu0555 at 541.567 kb on + strand, within Atu0555 at 541.570 kb on - strand, within Atu0555 at 541.691 kb on + strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.704 kb on - strand, within Atu0555 at 541.728 kb on - strand, within Atu0555 at 541.777 kb on - strand, within Atu0555 at 541.785 kb on - strand, within Atu0555 at 541.895 kb on + strand at 541.917 kb on - strand at 542.097 kb on + strand, within Atu0556 at 542.105 kb on - strand, within Atu0556 at 542.150 kb on + strand, within Atu0556 at 542.185 kb on - strand, within Atu0556 at 542.198 kb on + strand, within Atu0556 at 542.283 kb on - strand, within Atu0556 at 542.383 kb on - strand, within Atu0556
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 540,059 + Atu0552 0.18 +0.2 540,243 - Atu0552 0.41 +0.2 540,265 - Atu0552 0.44 +0.2 540,369 + Atu0552 0.57 +0.3 540,411 - Atu0552 0.63 -0.2 540,411 - Atu0552 0.63 +1.8 540,417 + Atu0552 0.63 -0.1 540,461 + Atu0552 0.69 -0.1 540,467 - Atu0552 0.70 +0.3 540,541 + Atu0552 0.79 +0.0 540,583 + Atu0552 0.84 -0.7 540,617 + Atu0552 0.89 -0.3 540,617 + Atu0552 0.89 -0.1 540,625 - Atu0552 0.90 -0.1 540,648 + +0.2 540,698 + +0.8 540,722 + +0.1 540,724 - +0.4 540,744 + +0.5 540,744 + +0.5 540,865 - Atu0553 0.42 +1.1 540,938 + Atu0553 0.63 +0.8 540,942 - Atu0553 0.64 -0.1 540,951 + Atu0553 0.67 -0.1 540,964 - Atu0553 0.71 -0.2 540,972 - Atu0553 0.73 +1.3 540,994 - Atu0553 0.80 +0.1 541,037 - +0.2 541,119 + Atu0554 0.14 -0.3 541,300 + Atu0554 0.57 -0.4 541,316 + Atu0554 0.61 -1.3 541,319 - Atu0554 0.62 -1.3 541,347 + Atu0554 0.69 -0.7 541,360 - Atu0554 0.72 +1.0 541,417 + Atu0554 0.85 -0.1 541,423 - Atu0554 0.87 -0.4 541,423 - Atu0554 0.87 -0.1 541,425 - Atu0554 0.87 -0.2 541,487 + -0.1 541,519 + +0.2 541,536 - Atu0555 0.14 +0.2 541,567 + Atu0555 0.22 +0.3 541,570 - Atu0555 0.22 -1.9 541,691 + Atu0555 0.53 -0.2 541,693 - Atu0555 0.54 +0.6 541,693 - Atu0555 0.54 -0.3 541,699 - Atu0555 0.55 +0.3 541,699 - Atu0555 0.55 +0.3 541,704 - Atu0555 0.56 +0.1 541,728 - Atu0555 0.63 -0.6 541,777 - Atu0555 0.75 -0.3 541,785 - Atu0555 0.77 -0.3 541,895 + +0.1 541,917 - -0.1 542,097 + Atu0556 0.13 +2.8 542,105 - Atu0556 0.15 -0.1 542,150 + Atu0556 0.26 +0.4 542,185 - Atu0556 0.35 +0.8 542,198 + Atu0556 0.38 -0.4 542,283 - Atu0556 0.59 +0.2 542,383 - Atu0556 0.83 +0.3
Or see this region's nucleotide sequence