Strain Fitness in Agrobacterium fabrum C58 around Atu0141
Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X |
|---|---|---|---|---|---|
| remove | |||||
| 143,083 | - | Atu0140 | 0.19 | +0.6 | |
| 143,093 | - | Atu0140 | 0.21 | +1.2 | |
| 143,227 | - | Atu0140 | 0.42 | -0.1 | |
| 143,728 | - | -0.0 | |||
| 143,743 | - | -0.1 | |||
| 143,822 | + | Atu0141 | 0.11 | -0.6 | |
| 143,971 | - | Atu0141 | 0.19 | -0.2 | |
| 144,754 | - | Atu0141 | 0.58 | -0.2 | |
| 145,458 | - | -0.2 | |||
| 145,492 | + | -2.2 | |||
| 145,808 | - | Atu0142 | 0.13 | -0.3 | |
| 146,054 | + | Atu0142 | 0.38 | +0.2 | |
| 146,179 | + | Atu0142 | 0.51 | -1.4 | |
| 146,446 | + | Atu0142 | 0.77 | -1.8 |
Or see this region's nucleotide sequence