Strain Fitness in Agrobacterium fabrum C58 around Atu6079

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
93,567	+		Atu6078	0.22	+0.1
93,569	+		Atu6078	0.22	-0.4
93,593	-		Atu6078	0.24	+1.9
93,598	-		Atu6078	0.24	+2.2
93,730	-		Atu6078	0.35	+0.3
93,815	-		Atu6078	0.42	-0.3
93,823	-		Atu6078	0.43	-0.5
93,845	+		Atu6078	0.44	-0.1
93,845	+		Atu6078	0.44	-0.7
93,853	+		Atu6078	0.45	+0.3
93,853	-		Atu6078	0.45	-1.7
93,853	-		Atu6078	0.45	+1.8
93,882	+		Atu6078	0.48	-3.1
93,931	-		Atu6078	0.52	-2.5
93,951	+		Atu6078	0.53	+1.5
93,981	+		Atu6078	0.56	+1.0
94,131	+		Atu6078	0.68	+1.9
94,139	-		Atu6078	0.68	+0.1
94,139	-		Atu6078	0.68	+0.2
94,141	+		Atu6078	0.69	+1.2
94,142	+		Atu6078	0.69	+4.2
94,149	-		Atu6078	0.69	+0.3
94,150	-		Atu6078	0.69	+1.6
94,210	+		Atu6078	0.74	+0.7
94,211	+		Atu6078	0.74	-1.0
94,221	+		Atu6078	0.75	+0.1
94,226	+		Atu6078	0.76	-0.1
94,231	+		Atu6078	0.76	+0.9
94,234	-		Atu6078	0.76	+0.4
94,260	+		Atu6078	0.78	+0.1
94,270	+		Atu6078	0.79	-0.1
94,278	-		Atu6078	0.80	-0.8
94,316	+		Atu6078	0.83	+1.3
94,380	+		Atu6078	0.88	-1.4
94,388	-		Atu6078	0.89	+0.6
94,393	+		Atu6078	0.89	+0.2
94,397	-		Atu6078	0.89	+1.8
94,502	-				-1.1
94,507	+				+0.4
94,507	+				+0.2
94,561	-				-0.0
94,596	+				+0.7
94,596	+				-0.4
94,630	-				+0.9
94,630	-				-0.0
94,746	-		Atu6079	0.17	-0.0
94,848	-		Atu6079	0.25	+1.9
94,850	+		Atu6079	0.25	+0.0
94,869	-		Atu6079	0.27	+2.8
94,884	-		Atu6079	0.28	+0.6
95,036	-		Atu6079	0.40	+0.6
95,045	+		Atu6079	0.40	-0.5
95,051	+		Atu6079	0.41	+1.6
95,059	-		Atu6079	0.42	+1.0
95,066	+		Atu6079	0.42	+0.8
95,096	+		Atu6079	0.44	+2.8
95,097	+		Atu6079	0.44	-0.7
95,108	+		Atu6079	0.45	+0.5
95,117	+		Atu6079	0.46	+1.2
95,125	-		Atu6079	0.47	+0.8
95,150	-		Atu6079	0.49	-0.1
95,178	+		Atu6079	0.51	+0.9
95,214	-		Atu6079	0.54	+1.2
95,230	-		Atu6079	0.55	+0.6
95,330	-		Atu6079	0.62	+1.0
95,331	-		Atu6079	0.63	+0.8
95,374	+		Atu6079	0.66	-0.3
95,382	-		Atu6079	0.67	-0.0
95,449	+		Atu6079	0.72	+1.6
95,457	-		Atu6079	0.72	+0.1
95,457	-		Atu6079	0.72	-0.7
95,457	-		Atu6079	0.72	+0.0
95,457	-		Atu6079	0.72	+1.6
95,535	-		Atu6079	0.78	+2.2
95,543	-		Atu6079	0.79	-2.2
95,550	-		Atu6079	0.80	+1.6
95,589	+		Atu6079	0.83	-0.5
95,645	-		Atu6079	0.87	+1.6
95,696	+				+0.9
95,704	-				+0.4
95,831	+				-0.1
95,831	+				+1.0
95,949	-				+0.6
96,062	-				+1.0
96,090	+		Atu6080	0.11	+0.4
96,090	+		Atu6080	0.11	+0.4
96,098	-		Atu6080	0.12	-0.0
96,098	-		Atu6080	0.12	+1.2
96,125	+		Atu6080	0.14	+3.2
96,234	+		Atu6080	0.26	+0.6
96,269	+		Atu6080	0.29	-1.0
96,389	+		Atu6080	0.42	-0.3
96,399	+		Atu6080	0.43	+0.8
96,399	+		Atu6080	0.43	-0.2
96,422	+		Atu6080	0.45	+0.7
96,422	+		Atu6080	0.45	+0.0
96,422	+		Atu6080	0.45	-1.3
96,495	-		Atu6080	0.53	+0.1
96,527	+		Atu6080	0.56	+0.9
96,550	+		Atu6080	0.59	+0.5
96,591	+		Atu6080	0.63	+1.8
96,592	+		Atu6080	0.63	+1.2
96,627	-		Atu6080	0.67	+0.0
96,634	-		Atu6080	0.67	+1.8
96,637	+		Atu6080	0.68	-1.5
96,686	-		Atu6080	0.73	-0.8
96,703	+		Atu6080	0.74	+0.2
96,703	+		Atu6080	0.74	+0.2
96,703	+		Atu6080	0.74	+0.9
96,709	+		Atu6080	0.75	+0.7
96,710	-		Atu6080	0.75	-1.8
96,711	-		Atu6080	0.75	-0.4
96,711	-		Atu6080	0.75	+1.6
96,711	-		Atu6080	0.75	-1.1
96,717	-		Atu6080	0.76	+1.2
96,759	+		Atu6080	0.80	-0.3
96,793	-		Atu6080	0.84	+0.5
96,793	-		Atu6080	0.84	+1.6