Strain Fitness in Agrobacterium fabrum C58 around Atu6033

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6031 and Atu6032 are separated by 12 nucleotidesAtu6032 and Atu6033 overlap by 1 nucleotidesAtu6033 and Atu6034 are separated by 17 nucleotidesAtu6034 and Atu6035 are separated by 14 nucleotides Atu6031: Atu6031 - conjugal transfer protein, at 41,570 to 42,886 Atu6031 Atu6032: Atu6032 - conjugal transfer protein, at 42,899 to 43,375 Atu6032 Atu6033: Atu6033 - conjugal transfer protein, at 43,375 to 44,229 Atu6033 Atu6034: Atu6034 - conjugal transfer protein, at 44,247 to 44,909 Atu6034 Atu6035: Atu6035 - conjugal transfer protein, at 44,924 to 46,120 Atu6035 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2 3at 42.398 kb on + strand, within Atu6031at 42.398 kb on + strand, within Atu6031at 42.406 kb on - strand, within Atu6031at 42.458 kb on + strand, within Atu6031at 42.500 kb on - strand, within Atu6031at 42.591 kb on + strand, within Atu6031at 42.625 kb on + strand, within Atu6031at 42.649 kb on + strand, within Atu6031at 42.655 kb on - strand, within Atu6031at 42.655 kb on - strand, within Atu6031at 42.660 kb on + strand, within Atu6031at 42.660 kb on + strand, within Atu6031at 42.668 kb on - strand, within Atu6031at 42.680 kb on + strand, within Atu6031at 42.745 kb on + strand, within Atu6031at 42.856 kb on - strandat 42.856 kb on - strandat 42.894 kb on - strandat 42.894 kb on - strandat 42.916 kb on - strandat 43.049 kb on - strand, within Atu6032at 43.086 kb on + strand, within Atu6032at 43.086 kb on + strand, within Atu6032at 43.094 kb on - strand, within Atu6032at 43.099 kb on - strand, within Atu6032at 43.100 kb on + strand, within Atu6032at 43.134 kb on + strand, within Atu6032at 43.152 kb on - strand, within Atu6032at 43.170 kb on + strand, within Atu6032at 43.272 kb on - strand, within Atu6032at 43.277 kb on + strand, within Atu6032at 43.310 kb on + strand, within Atu6032at 43.311 kb on - strand, within Atu6032at 43.311 kb on - strand, within Atu6032at 43.311 kb on - strand, within Atu6032at 43.324 kb on - strand, within Atu6032at 43.383 kb on - strandat 43.429 kb on + strandat 43.437 kb on - strandat 43.448 kb on + strandat 43.509 kb on - strand, within Atu6033at 43.589 kb on + strand, within Atu6033at 43.629 kb on - strand, within Atu6033at 43.725 kb on - strand, within Atu6033at 43.781 kb on + strand, within Atu6033at 43.808 kb on + strand, within Atu6033at 43.818 kb on + strand, within Atu6033at 43.826 kb on - strand, within Atu6033at 43.826 kb on - strand, within Atu6033at 43.883 kb on + strand, within Atu6033at 43.891 kb on + strand, within Atu6033at 44.010 kb on + strand, within Atu6033at 44.010 kb on - strand, within Atu6033at 44.018 kb on - strand, within Atu6033at 44.095 kb on + strand, within Atu6033at 44.260 kb on + strandat 44.279 kb on + strandat 44.279 kb on + strandat 44.287 kb on - strandat 44.327 kb on + strand, within Atu6034at 44.421 kb on + strand, within Atu6034at 44.492 kb on + strand, within Atu6034at 44.542 kb on + strand, within Atu6034at 44.550 kb on - strand, within Atu6034at 44.550 kb on - strand, within Atu6034at 44.560 kb on - strand, within Atu6034at 44.585 kb on - strand, within Atu6034at 44.597 kb on + strand, within Atu6034at 44.672 kb on + strand, within Atu6034at 44.680 kb on - strand, within Atu6034at 44.696 kb on - strand, within Atu6034at 44.696 kb on - strand, within Atu6034at 44.706 kb on - strand, within Atu6034at 44.727 kb on - strand, within Atu6034at 44.734 kb on + strand, within Atu6034at 44.734 kb on + strand, within Atu6034at 44.734 kb on + strand, within Atu6034at 44.734 kb on + strand, within Atu6034at 44.734 kb on + strand, within Atu6034at 44.742 kb on - strand, within Atu6034at 44.742 kb on - strand, within Atu6034at 44.742 kb on - strand, within Atu6034at 44.742 kb on - strand, within Atu6034at 44.742 kb on - strand, within Atu6034at 44.742 kb on - strand, within Atu6034at 44.872 kb on + strandat 44.894 kb on + strandat 44.894 kb on + strandat 44.894 kb on + strandat 44.902 kb on - strandat 44.956 kb on - strandat 45.008 kb on - strandat 45.034 kb on - strandat 45.071 kb on + strand, within Atu6035at 45.100 kb on - strand, within Atu6035at 45.123 kb on + strand, within Atu6035at 45.143 kb on - strand, within Atu6035at 45.148 kb on - strand, within Atu6035

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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42,398 + Atu6031 0.63 -1.4
42,398 + Atu6031 0.63 +0.3
42,406 - Atu6031 0.63 +0.3
42,458 + Atu6031 0.67 -0.7
42,500 - Atu6031 0.71 +0.2
42,591 + Atu6031 0.78 +0.0
42,625 + Atu6031 0.80 +0.2
42,649 + Atu6031 0.82 +0.4
42,655 - Atu6031 0.82 +0.0
42,655 - Atu6031 0.82 +0.6
42,660 + Atu6031 0.83 -0.3
42,660 + Atu6031 0.83 -0.2
42,668 - Atu6031 0.83 -0.8
42,680 + Atu6031 0.84 +1.9
42,745 + Atu6031 0.89 +2.4
42,856 - +3.2
42,856 - +0.5
42,894 - -0.2
42,894 - +1.9
42,916 - +0.1
43,049 - Atu6032 0.31 +0.6
43,086 + Atu6032 0.39 +2.2
43,086 + Atu6032 0.39 -0.5
43,094 - Atu6032 0.41 +0.2
43,099 - Atu6032 0.42 +0.3
43,100 + Atu6032 0.42 +0.0
43,134 + Atu6032 0.49 -1.3
43,152 - Atu6032 0.53 +0.4
43,170 + Atu6032 0.57 +1.2
43,272 - Atu6032 0.78 +0.3
43,277 + Atu6032 0.79 -0.5
43,310 + Atu6032 0.86 -1.2
43,311 - Atu6032 0.86 +0.2
43,311 - Atu6032 0.86 +0.1
43,311 - Atu6032 0.86 -0.7
43,324 - Atu6032 0.89 +0.7
43,383 - +1.6
43,429 + -0.6
43,437 - +1.7
43,448 + +1.6
43,509 - Atu6033 0.16 +0.9
43,589 + Atu6033 0.25 -0.9
43,629 - Atu6033 0.30 -1.2
43,725 - Atu6033 0.41 -0.1
43,781 + Atu6033 0.47 +0.3
43,808 + Atu6033 0.51 +1.2
43,818 + Atu6033 0.52 +2.1
43,826 - Atu6033 0.53 -1.9
43,826 - Atu6033 0.53 +0.7
43,883 + Atu6033 0.59 -1.1
43,891 + Atu6033 0.60 +0.2
44,010 + Atu6033 0.74 +0.0
44,010 - Atu6033 0.74 +2.2
44,018 - Atu6033 0.75 +1.6
44,095 + Atu6033 0.84 -0.8
44,260 + +0.5
44,279 + -0.6
44,279 + +1.8
44,287 - +2.2
44,327 + Atu6034 0.12 +0.0
44,421 + Atu6034 0.26 +1.6
44,492 + Atu6034 0.37 +0.6
44,542 + Atu6034 0.44 +1.5
44,550 - Atu6034 0.46 +0.6
44,550 - Atu6034 0.46 -0.7
44,560 - Atu6034 0.47 +0.6
44,585 - Atu6034 0.51 +2.6
44,597 + Atu6034 0.53 +0.2
44,672 + Atu6034 0.64 +0.1
44,680 - Atu6034 0.65 -1.5
44,696 - Atu6034 0.68 +1.4
44,696 - Atu6034 0.68 +0.5
44,706 - Atu6034 0.69 +1.2
44,727 - Atu6034 0.72 +0.2
44,734 + Atu6034 0.73 +1.5
44,734 + Atu6034 0.73 -0.4
44,734 + Atu6034 0.73 +0.6
44,734 + Atu6034 0.73 -0.2
44,734 + Atu6034 0.73 +3.2
44,742 - Atu6034 0.75 -0.1
44,742 - Atu6034 0.75 +2.2
44,742 - Atu6034 0.75 +0.2
44,742 - Atu6034 0.75 +2.3
44,742 - Atu6034 0.75 +0.8
44,742 - Atu6034 0.75 +3.2
44,872 + +0.6
44,894 + -2.0
44,894 + +0.3
44,894 + +0.1
44,902 - +0.4
44,956 - +0.6
45,008 - -0.5
45,034 - +0.3
45,071 + Atu6035 0.12 +0.7
45,100 - Atu6035 0.15 -0.5
45,123 + Atu6035 0.17 -0.2
45,143 - Atu6035 0.18 -0.6
45,148 - Atu6035 0.19 +1.9

Or see this region's nucleotide sequence