Strain Fitness in Agrobacterium fabrum C58 around Atu6003

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
5,192	-				+1.8
5,198	+				+3.2
5,198	+				+1.4
5,216	+				+1.6
5,221	+				+0.2
5,336	-				+1.9
5,435	-				-0.3
5,454	+				+0.9
5,559	+				+2.6
5,590	+				-1.3
5,590	+				+1.2
5,663	-				+0.6
5,683	-				-0.0
5,693	+				+0.4
5,710	-				+0.6
5,739	+				-1.9
5,820	-				-0.6
5,820	-				+0.4
5,856	+				+0.3
5,875	-				+1.6
5,883	-				+1.9
5,922	-				+0.5
5,934	-				-0.2
5,935	+				-0.0
5,946	+				-0.5
5,954	-				-0.1
5,954	-				+0.1
5,958	+				+3.2
5,961	-				+3.2
6,025	-				-0.2
6,103	-				+1.8
6,116	-				+1.6
6,123	+				+0.5
6,123	+				-0.3
6,136	+				+1.1
6,136	+				-0.0
6,137	-				-1.3
6,148	+				+1.0
6,154	-				+1.1
6,157	-				+0.3
6,157	-				+0.3
6,192	-				+0.4
6,192	-				-0.8
6,233	+		Atu6003	0.13	+0.7
6,260	-		Atu6003	0.17	-0.6
6,263	-		Atu6003	0.17	+0.9
6,318	+		Atu6003	0.24	-1.3
6,326	-		Atu6003	0.26	+0.7
6,359	+		Atu6003	0.30	+2.2
6,363	-		Atu6003	0.31	+0.2
6,376	+		Atu6003	0.32	+0.9
6,384	-		Atu6003	0.33	+0.9
6,384	-		Atu6003	0.33	+0.1
6,384	-		Atu6003	0.33	+1.3
6,407	-		Atu6003	0.37	+0.3
6,457	+		Atu6003	0.43	+0.7
6,502	+		Atu6003	0.50	+0.0
6,548	-		Atu6003	0.56	-0.0
6,550	-		Atu6003	0.56	+0.6
6,575	-		Atu6003	0.60	+0.3
6,585	+		Atu6003	0.61	+2.2
6,588	+		Atu6003	0.61	+0.6
6,603	-		Atu6003	0.63	+0.6
6,608	-		Atu6003	0.64	-0.3
6,610	-		Atu6003	0.64	+1.0
6,628	-		Atu6003	0.67	+1.0
6,645	-		Atu6003	0.69	+0.9
6,725	+		Atu6003	0.80	-0.9
6,837	-				-0.2
6,847	+				+3.2
6,855	-				+1.6
7,105	+				+1.3
7,162	-		Atu8061	0.11	+1.0
7,210	+		Atu8061	0.29	+0.1
7,232	+		Atu8061	0.37	+0.4
7,286	+		Atu8061	0.57	+0.9
7,294	-		Atu8061	0.60	-0.7
7,323	+		Atu8061	0.71	+0.8
7,339	+		Atu8061	0.77	+0.7
7,380	-				+0.9
7,529	-				-0.1
7,552	-				+2.2
7,554	+				+0.6
7,554	+				+0.4
7,562	-				+1.2
7,562	-				+0.9
7,562	-				+3.2
7,564	-				+1.9
7,610	+				-0.3
7,634	-				+0.4
7,643	+				-0.3
7,648	+		Atu6004	0.10	+1.2
7,651	-		Atu6004	0.10	-0.4
7,651	-		Atu6004	0.10	+2.2
7,651	-		Atu6004	0.10	+0.2
7,658	+		Atu6004	0.11	+0.9
7,658	+		Atu6004	0.11	+0.2
7,658	+		Atu6004	0.11	+0.9
7,663	+		Atu6004	0.12	+1.1
7,668	+		Atu6004	0.13	+0.1
7,671	-		Atu6004	0.13	+3.2
7,676	-		Atu6004	0.14	+1.6
7,692	+		Atu6004	0.16	+0.4
7,692	+		Atu6004	0.16	+0.9
7,707	-		Atu6004	0.19	+3.2
7,724	+		Atu6004	0.21	+1.6
7,740	+		Atu6004	0.23	+2.2
7,757	-		Atu6004	0.26	-0.1
7,761	+		Atu6004	0.26	+2.9
7,762	-		Atu6004	0.26	-0.6
7,784	+		Atu6004	0.30	+0.2
7,792	+		Atu6004	0.31	-1.8
7,800	+		Atu6004	0.32	+0.5
7,800	+		Atu6004	0.32	+1.6
7,810	+		Atu6004	0.33	+0.4
7,818	-		Atu6004	0.34	+0.4
7,818	-		Atu6004	0.34	-0.3
7,818	-		Atu6004	0.34	+1.5
7,818	-		Atu6004	0.34	-0.5
7,818	-		Atu6004	0.34	-0.1
7,824	-		Atu6004	0.35	+0.2
7,824	-		Atu6004	0.35	-0.3
7,857	-		Atu6004	0.40	+0.5