Strain Fitness in Agrobacterium fabrum C58 around Atu8194

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,096,637	+		Atu3982	0.61	-0.1
1,096,645	-		Atu3982	0.61	+0.3
1,096,647	+		Atu3982	0.61	+0.2
1,096,674	-		Atu3982	0.62	+0.8
1,096,719	+		Atu3982	0.65	+0.1
1,096,764	+		Atu3982	0.67	-1.0
1,096,764	+		Atu3982	0.67	+0.0
1,096,764	+		Atu3982	0.67	-0.3
1,096,772	-		Atu3982	0.67	+0.8
1,096,828	-		Atu3982	0.70	+0.4
1,096,850	-		Atu3982	0.71	-0.2
1,096,902	+		Atu3982	0.74	+0.2
1,096,908	-		Atu3982	0.74	+0.4
1,096,908	-		Atu3982	0.74	-1.0
1,096,924	+		Atu3982	0.75	-0.2
1,096,985	-		Atu3982	0.78	-0.0
1,097,016	-		Atu3982	0.80	-0.2
1,097,023	+		Atu3982	0.80	+0.4
1,097,031	-		Atu3982	0.80	+0.1
1,097,106	+		Atu3982	0.84	+1.0
1,097,114	-		Atu3982	0.85	+0.6
1,097,119	-		Atu3982	0.85	+2.8
1,097,154	+		Atu3982	0.87	-0.3
1,097,163	-		Atu3982	0.87	+0.1
1,097,173	+		Atu3982	0.88	+0.1
1,097,202	+		Atu3982	0.89	+0.0
1,097,209	+		Atu3982	0.89	+0.0
1,097,245	+				-0.8
1,097,255	+				+0.2
1,097,390	+				-0.1
1,097,414	+				+0.2
1,097,414	+				+0.6
1,097,414	+				+0.9
1,097,414	+				+0.6
1,097,422	-				+0.1
1,097,422	-				+0.2
1,097,422	-				+0.3
1,097,422	-				+0.2
1,097,422	-				+0.6
1,097,584	+				-0.6
1,097,648	+				-0.4
1,097,792	+		Atu8194	0.37	+0.4
1,097,845	-		Atu8194	0.49	+0.1
1,097,928	+		Atu8194	0.68	+0.9
1,098,068	-				-1.9
1,098,102	-				-0.8
1,098,102	-				-0.9
1,098,102	-				+0.5
1,098,102	-				-0.1
1,098,128	+				+0.3
1,098,128	+				-0.7
1,098,128	+				-0.7
1,098,136	-				+1.4
1,098,136	-				-0.4
1,098,212	-				+1.1
1,098,357	+		Atu3984	0.18	-0.1
1,098,358	+		Atu3984	0.18	-0.4
1,098,360	-		Atu3984	0.18	-1.2
1,098,428	+		Atu3984	0.23	+0.4
1,098,438	+		Atu3984	0.23	+1.4
1,098,446	-		Atu3984	0.24	+0.4
1,098,500	-		Atu3984	0.27	-0.7
1,098,596	+		Atu3984	0.33	-0.0
1,098,600	-		Atu3984	0.33	+0.2
1,098,642	+		Atu3984	0.36	+0.0
1,098,650	-		Atu3984	0.37	+0.2
1,098,650	-		Atu3984	0.37	-0.2
1,098,700	+		Atu3984	0.40	-0.2
1,098,761	-		Atu3984	0.43	-0.0
1,098,761	-		Atu3984	0.43	-0.0
1,098,793	-		Atu3984	0.45	+0.1
1,098,799	+		Atu3984	0.46	-1.0
1,098,843	-		Atu3984	0.49	+0.3
1,098,858	+		Atu3984	0.50	-0.1
1,098,873	+		Atu3984	0.50	-1.2
1,098,953	-		Atu3984	0.55	+1.2
1,098,974	+		Atu3984	0.57	+2.9
1,098,974	+		Atu3984	0.57	-0.1
1,098,982	-		Atu3984	0.57	+0.2
1,098,992	-		Atu3984	0.58	+0.1