Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6178 and Atu6179 are separated by 141 nucleotides Atu6179 and Atu6180 are separated by 2 nucleotides Atu6180 and Atu6181 are separated by 270 nucleotides Atu6181 and Atu6182 are separated by 33 nucleotides
Atu6178: Atu6178 - two component response regulator, at 193,546 to 194,307
Atu6178
Atu6179: Atu6179 - virA/G regulated protein, at 194,449 to 195,057
Atu6179
Atu6180: Atu6180 - virA/G regulated protein, at 195,060 to 195,755
Atu6180
Atu6181: Atu6181 - virA/G regulated topoisomerase, at 196,026 to 196,469
Atu6181
Atu6182: Atu6182 - endonuclease, at 196,503 to 197,846
Atu6182
Position (kb) 195
196 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 194.060 kb on + strand, within Atu6178 at 194.061 kb on + strand, within Atu6178 at 194.108 kb on + strand, within Atu6178 at 194.108 kb on + strand, within Atu6178 at 194.109 kb on - strand, within Atu6178 at 194.109 kb on - strand, within Atu6178 at 194.129 kb on + strand, within Atu6178 at 194.146 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on + strand, within Atu6178 at 194.152 kb on - strand, within Atu6178 at 194.152 kb on - strand, within Atu6178 at 194.157 kb on - strand, within Atu6178 at 194.165 kb on + strand, within Atu6178 at 194.173 kb on - strand, within Atu6178 at 194.216 kb on - strand, within Atu6178 at 194.219 kb on + strand, within Atu6178 at 194.219 kb on + strand, within Atu6178 at 194.227 kb on - strand, within Atu6178 at 194.227 kb on - strand, within Atu6178 at 194.237 kb on - strand at 194.246 kb on + strand at 194.269 kb on + strand at 194.302 kb on + strand at 194.317 kb on + strand at 194.385 kb on + strand at 194.385 kb on + strand at 194.404 kb on + strand at 194.409 kb on + strand at 194.412 kb on - strand at 194.431 kb on + strand at 194.437 kb on + strand at 194.439 kb on - strand at 194.453 kb on - strand at 194.568 kb on + strand, within Atu6179 at 194.647 kb on - strand, within Atu6179 at 194.669 kb on + strand, within Atu6179 at 194.702 kb on - strand, within Atu6179 at 194.728 kb on + strand, within Atu6179 at 194.804 kb on - strand, within Atu6179 at 194.868 kb on + strand, within Atu6179 at 194.868 kb on + strand, within Atu6179 at 194.876 kb on - strand, within Atu6179 at 194.896 kb on + strand, within Atu6179 at 194.904 kb on - strand, within Atu6179 at 194.904 kb on - strand, within Atu6179 at 195.040 kb on - strand at 195.059 kb on - strand at 195.066 kb on + strand at 195.066 kb on + strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.074 kb on - strand at 195.104 kb on - strand at 195.165 kb on - strand, within Atu6180 at 195.237 kb on - strand, within Atu6180 at 195.239 kb on + strand, within Atu6180 at 195.245 kb on - strand, within Atu6180 at 195.272 kb on - strand, within Atu6180 at 195.318 kb on - strand, within Atu6180 at 195.326 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.415 kb on - strand, within Atu6180 at 195.418 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.434 kb on + strand, within Atu6180 at 195.442 kb on - strand, within Atu6180 at 195.452 kb on - strand, within Atu6180 at 195.476 kb on - strand, within Atu6180 at 195.523 kb on - strand, within Atu6180 at 195.525 kb on + strand, within Atu6180 at 195.533 kb on - strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.535 kb on + strand, within Atu6180 at 195.536 kb on + strand, within Atu6180 at 195.569 kb on - strand, within Atu6180 at 195.589 kb on + strand, within Atu6180 at 195.589 kb on - strand, within Atu6180 at 195.589 kb on - strand, within Atu6180 at 195.633 kb on + strand, within Atu6180 at 195.700 kb on - strand at 195.993 kb on + strand at 196.036 kb on + strand at 196.037 kb on - strand at 196.044 kb on - strand at 196.048 kb on + strand at 196.071 kb on - strand, within Atu6181 at 196.104 kb on - strand, within Atu6181 at 196.178 kb on + strand, within Atu6181 at 196.185 kb on + strand, within Atu6181 at 196.192 kb on + strand, within Atu6181 at 196.210 kb on + strand, within Atu6181 at 196.266 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.289 kb on - strand, within Atu6181 at 196.312 kb on - strand, within Atu6181 at 196.386 kb on + strand, within Atu6181 at 196.396 kb on - strand, within Atu6181 at 196.459 kb on - strand at 196.459 kb on - strand at 196.459 kb on - strand at 196.480 kb on + strand at 196.566 kb on - strand at 196.606 kb on + strand at 196.606 kb on + strand at 196.606 kb on + strand at 196.614 kb on - strand at 196.614 kb on - strand at 196.692 kb on - strand, within Atu6182 at 196.694 kb on - strand, within Atu6182 at 196.740 kb on - strand, within Atu6182 at 196.747 kb on - strand, within Atu6182
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 194,060 + Atu6178 0.67 -0.3 194,061 + Atu6178 0.68 -0.4 194,108 + Atu6178 0.74 -1.5 194,108 + Atu6178 0.74 +0.5 194,109 - Atu6178 0.74 +1.9 194,109 - Atu6178 0.74 +2.8 194,129 + Atu6178 0.77 +0.8 194,146 + Atu6178 0.79 +0.6 194,152 + Atu6178 0.80 +1.7 194,152 + Atu6178 0.80 +1.7 194,152 + Atu6178 0.80 +1.5 194,152 - Atu6178 0.80 +0.2 194,152 - Atu6178 0.80 +0.4 194,157 - Atu6178 0.80 -2.3 194,165 + Atu6178 0.81 -0.7 194,173 - Atu6178 0.82 -1.2 194,216 - Atu6178 0.88 -0.5 194,219 + Atu6178 0.88 +0.6 194,219 + Atu6178 0.88 -1.9 194,227 - Atu6178 0.89 +0.7 194,227 - Atu6178 0.89 -1.6 194,237 - +0.7 194,246 + +1.5 194,269 + +0.5 194,302 + +0.3 194,317 + +0.6 194,385 + +2.1 194,385 + +0.5 194,404 + -0.6 194,409 + +0.3 194,412 - +1.7 194,431 + +1.1 194,437 + +2.5 194,439 - -1.0 194,453 - +0.1 194,568 + Atu6179 0.20 +0.4 194,647 - Atu6179 0.33 +2.3 194,669 + Atu6179 0.36 +0.5 194,702 - Atu6179 0.42 +1.3 194,728 + Atu6179 0.46 +1.2 194,804 - Atu6179 0.58 +1.3 194,868 + Atu6179 0.69 -0.2 194,868 + Atu6179 0.69 +0.1 194,876 - Atu6179 0.70 +0.3 194,896 + Atu6179 0.73 -0.8 194,904 - Atu6179 0.75 -0.1 194,904 - Atu6179 0.75 -1.1 195,040 - -0.3 195,059 - +0.7 195,066 + +3.3 195,066 + +1.4 195,074 - +0.7 195,074 - +0.0 195,074 - +2.3 195,104 - +0.1 195,165 - Atu6180 0.15 +0.9 195,237 - Atu6180 0.25 +0.5 195,239 + Atu6180 0.26 +0.4 195,245 - Atu6180 0.27 -1.6 195,272 - Atu6180 0.30 +2.3 195,318 - Atu6180 0.37 +0.3 195,326 - Atu6180 0.38 -0.5 195,415 - Atu6180 0.51 -0.7 195,415 - Atu6180 0.51 +1.9 195,415 - Atu6180 0.51 -0.4 195,418 + Atu6180 0.51 +0.5 195,434 + Atu6180 0.54 +1.7 195,434 + Atu6180 0.54 +2.0 195,434 + Atu6180 0.54 +0.5 195,442 - Atu6180 0.55 -0.0 195,452 - Atu6180 0.56 -0.3 195,476 - Atu6180 0.60 -2.0 195,523 - Atu6180 0.67 -0.1 195,525 + Atu6180 0.67 +0.5 195,533 - Atu6180 0.68 -0.8 195,535 + Atu6180 0.68 -0.7 195,535 + Atu6180 0.68 +1.0 195,535 + Atu6180 0.68 +0.3 195,535 + Atu6180 0.68 +0.9 195,536 + Atu6180 0.68 +0.3 195,569 - Atu6180 0.73 +0.6 195,589 + Atu6180 0.76 -1.3 195,589 - Atu6180 0.76 -0.5 195,589 - Atu6180 0.76 +0.0 195,633 + Atu6180 0.82 +0.0 195,700 - -0.5 195,993 + +0.6 196,036 + +1.2 196,037 - +0.2 196,044 - +2.0 196,048 + +0.7 196,071 - Atu6181 0.10 -1.0 196,104 - Atu6181 0.18 +0.9 196,178 + Atu6181 0.34 +0.3 196,185 + Atu6181 0.36 +0.7 196,192 + Atu6181 0.37 +2.0 196,210 + Atu6181 0.41 +1.3 196,266 - Atu6181 0.54 +1.1 196,289 - Atu6181 0.59 -0.2 196,289 - Atu6181 0.59 -0.6 196,289 - Atu6181 0.59 +0.5 196,312 - Atu6181 0.64 +0.6 196,386 + Atu6181 0.81 +0.9 196,396 - Atu6181 0.83 +1.7 196,459 - +0.8 196,459 - -1.1 196,459 - +2.8 196,480 + -0.4 196,566 - +0.5 196,606 + +0.3 196,606 + +4.8 196,606 + -0.1 196,614 - +1.9 196,614 - +0.5 196,692 - Atu6182 0.14 +1.6 196,694 - Atu6182 0.14 +0.9 196,740 - Atu6182 0.18 +0.5 196,747 - Atu6182 0.18 +0.7
Or see this region's nucleotide sequence