Strain Fitness in Agrobacterium fabrum C58 around Atu6173

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
188,379	+				+0.6
188,444	+				+1.4
188,452	-				+0.5
188,452	-				+0.6
188,485	-				-0.4
188,528	-				-1.9
188,542	-				+0.2
188,548	+		Atu6172	0.11	-0.2
188,584	+		Atu6172	0.15	+0.7
188,586	-		Atu6172	0.15	+1.7
188,594	-		Atu6172	0.16	+0.3
188,598	+		Atu6172	0.16	-0.2
188,598	+		Atu6172	0.16	-0.6
188,607	+		Atu6172	0.17	+0.1
188,662	-		Atu6172	0.23	-0.4
188,699	-		Atu6172	0.28	-1.8
188,781	+		Atu6172	0.37	+0.2
188,789	-		Atu6172	0.38	+0.4
188,789	-		Atu6172	0.38	+0.8
188,789	-		Atu6172	0.38	+0.7
188,799	-		Atu6172	0.39	+0.5
188,801	+		Atu6172	0.39	+2.3
188,809	-		Atu6172	0.40	-0.2
188,818	+		Atu6172	0.41	+0.7
188,818	+		Atu6172	0.41	-0.3
188,818	+		Atu6172	0.41	-0.6
188,826	-		Atu6172	0.42	-0.7
188,898	+		Atu6172	0.50	+1.0
188,921	+		Atu6172	0.53	+1.4
188,981	+		Atu6172	0.59	-1.4
188,988	+		Atu6172	0.60	+1.3
189,003	+		Atu6172	0.62	+0.7
189,043	+		Atu6172	0.66	-0.6
189,061	+		Atu6172	0.68	+0.5
189,062	-		Atu6172	0.68	+1.3
189,069	-		Atu6172	0.69	-0.3
189,133	+		Atu6172	0.76	-1.8
189,133	+		Atu6172	0.76	-0.2
189,133	+		Atu6172	0.76	+1.7
189,133	+		Atu6172	0.76	+0.7
189,133	+		Atu6172	0.76	+0.1
189,133	+		Atu6172	0.76	+1.4
189,141	-		Atu6172	0.77	+0.1
189,311	-				-0.5
189,311	-				+1.9
189,343	-				+3.3
189,375	+				+1.7
189,375	+				-0.9
189,394	+		Atu6173	0.10	+0.3
189,486	+		Atu6173	0.65	+0.1
189,503	+		Atu6173	0.75	-0.8
189,511	-		Atu6173	0.80	+0.8
189,519	-		Atu6173	0.85	+1.6
189,521	-		Atu6173	0.86	-0.1
189,537	-				+0.4
189,538	+				+2.7
189,546	-				+1.3
189,548	+				+0.8
189,551	-				-0.9
189,576	+				+1.5
189,579	-				-0.6
189,584	+				+0.9
189,584	+				-1.5
189,592	-				+1.7
189,593	+				+2.3
189,602	+				-0.6
189,638	+		Atu6174	0.15	+2.1
189,645	-		Atu6174	0.16	+0.7
189,646	-		Atu6174	0.16	-0.2
189,652	-		Atu6174	0.17	+1.8
189,655	-		Atu6174	0.17	-0.0
189,665	-		Atu6174	0.19	-0.1
189,687	+		Atu6174	0.22	-0.3
189,710	-		Atu6174	0.25	+0.7
189,722	+		Atu6174	0.27	-0.2
189,722	+		Atu6174	0.27	+0.5
189,725	-		Atu6174	0.27	+0.5
189,730	-		Atu6174	0.28	+0.8
189,730	-		Atu6174	0.28	+0.7
189,730	-		Atu6174	0.28	+0.5
189,730	-		Atu6174	0.28	+0.6
189,735	-		Atu6174	0.29	-1.4
189,735	-		Atu6174	0.29	-2.1
189,735	-		Atu6174	0.29	+1.1
189,805	-		Atu6174	0.38	+3.3
189,810	-		Atu6174	0.39	+0.5
189,813	-		Atu6174	0.39	+0.3
189,846	+		Atu6174	0.44	+0.2
189,852	-		Atu6174	0.45	+1.0
189,889	+		Atu6174	0.50	-0.0
189,889	+		Atu6174	0.50	+2.7
189,889	+		Atu6174	0.50	+0.4
189,890	-		Atu6174	0.50	+1.5
189,892	-		Atu6174	0.51	-0.2
189,897	-		Atu6174	0.51	-0.6
189,897	-		Atu6174	0.51	+0.1
189,916	+		Atu6174	0.54	+0.1
189,924	-		Atu6174	0.55	-0.4
189,924	-		Atu6174	0.55	+0.1
190,000	+		Atu6174	0.66	-0.3
190,003	-		Atu6174	0.66	+1.7
190,030	+		Atu6174	0.70	+0.7
190,038	-		Atu6174	0.71	+2.7
190,111	-		Atu6174	0.81	+1.7
190,119	-		Atu6174	0.82	-0.8
190,153	+		Atu6174	0.87	+0.1
190,161	-		Atu6174	0.88	+1.5
190,171	-		Atu6174	0.90	-0.4
190,189	+				+1.1
190,201	+				+0.3
190,222	+				+1.7
190,279	-				+1.1
190,307	-				+0.4
190,321	+				+1.3
190,326	+				+0.9
190,326	+				-1.9
190,329	-				+0.9
190,334	-		Atu6175	0.11	+1.0
190,386	-		Atu6175	0.16	+1.3
190,422	-		Atu6175	0.21	+0.7
190,448	+		Atu6175	0.23	+0.6
190,493	-		Atu6175	0.29	+0.2