Strain Fitness in Agrobacterium fabrum C58 around Atu6074

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6073 and Atu6074 are separated by 57 nucleotidesAtu6074 and Atu6075 overlap by 1 nucleotidesAtu6075 and Atu6076 overlap by 1 nucleotides Atu6073: Atu6073 - ABC transporter, substrate binding protein (peptide), at 86,557 to 88,152 Atu6073 Atu6074: Atu6074 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 88,210 to 89,877 Atu6074 Atu6075: Atu6075 - ABC transporter, membrane spanning protein (peptide), at 89,877 to 90,818 Atu6075 Atu6076: Atu6076 - ABC transporter, membrane spanning protein (peptide), at 90,818 to 91,819 Atu6076 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3at 87.269 kb on - strand, within Atu6073at 87.306 kb on + strand, within Atu6073at 87.316 kb on + strand, within Atu6073at 87.316 kb on + strand, within Atu6073at 87.324 kb on - strand, within Atu6073at 87.324 kb on - strand, within Atu6073at 87.324 kb on - strand, within Atu6073at 87.339 kb on + strand, within Atu6073at 87.339 kb on + strand, within Atu6073at 87.345 kb on - strand, within Atu6073at 87.357 kb on + strand, within Atu6073at 87.400 kb on + strand, within Atu6073at 87.474 kb on + strand, within Atu6073at 87.477 kb on - strand, within Atu6073at 87.479 kb on + strand, within Atu6073at 87.531 kb on + strand, within Atu6073at 87.531 kb on + strand, within Atu6073at 87.531 kb on + strand, within Atu6073at 87.531 kb on + strand, within Atu6073at 87.531 kb on + strand, within Atu6073at 87.539 kb on - strand, within Atu6073at 87.539 kb on - strand, within Atu6073at 87.539 kb on - strand, within Atu6073at 87.539 kb on - strand, within Atu6073at 87.539 kb on - strand, within Atu6073at 87.539 kb on - strand, within Atu6073at 87.539 kb on - strand, within Atu6073at 87.545 kb on + strand, within Atu6073at 87.692 kb on + strand, within Atu6073at 87.692 kb on + strand, within Atu6073at 87.700 kb on - strand, within Atu6073at 87.700 kb on - strand, within Atu6073at 87.700 kb on - strand, within Atu6073at 87.817 kb on + strand, within Atu6073at 87.817 kb on + strand, within Atu6073at 87.825 kb on - strand, within Atu6073at 87.830 kb on + strand, within Atu6073at 87.858 kb on + strand, within Atu6073at 87.858 kb on + strand, within Atu6073at 87.866 kb on + strand, within Atu6073at 87.866 kb on + strand, within Atu6073at 87.866 kb on - strand, within Atu6073at 87.874 kb on - strand, within Atu6073at 87.874 kb on - strand, within Atu6073at 87.893 kb on + strand, within Atu6073at 87.893 kb on + strand, within Atu6073at 87.901 kb on - strand, within Atu6073at 87.932 kb on + strand, within Atu6073at 87.957 kb on - strand, within Atu6073at 87.968 kb on - strand, within Atu6073at 88.061 kb on - strandat 88.079 kb on + strandat 88.189 kb on + strandat 88.189 kb on + strandat 88.197 kb on - strandat 88.321 kb on + strandat 88.440 kb on - strand, within Atu6074at 88.474 kb on - strand, within Atu6074at 88.480 kb on + strand, within Atu6074at 88.515 kb on + strand, within Atu6074at 88.540 kb on + strand, within Atu6074at 88.630 kb on + strand, within Atu6074at 88.679 kb on - strand, within Atu6074at 88.690 kb on - strand, within Atu6074at 88.735 kb on + strand, within Atu6074at 88.735 kb on + strand, within Atu6074at 88.739 kb on - strand, within Atu6074at 88.745 kb on + strand, within Atu6074at 88.756 kb on + strand, within Atu6074at 88.756 kb on + strand, within Atu6074at 88.764 kb on - strand, within Atu6074at 88.918 kb on + strand, within Atu6074at 89.021 kb on - strand, within Atu6074at 89.046 kb on - strand, within Atu6074at 89.070 kb on + strand, within Atu6074at 89.070 kb on + strand, within Atu6074at 89.134 kb on - strand, within Atu6074at 89.162 kb on + strand, within Atu6074at 89.162 kb on + strand, within Atu6074at 89.170 kb on - strand, within Atu6074at 89.170 kb on - strand, within Atu6074at 89.221 kb on - strand, within Atu6074at 89.237 kb on - strand, within Atu6074at 89.250 kb on + strand, within Atu6074at 89.256 kb on + strand, within Atu6074at 89.258 kb on + strand, within Atu6074at 89.266 kb on - strand, within Atu6074at 89.328 kb on - strand, within Atu6074at 89.350 kb on + strand, within Atu6074at 89.359 kb on - strand, within Atu6074at 89.384 kb on + strand, within Atu6074at 89.433 kb on + strand, within Atu6074at 89.521 kb on + strand, within Atu6074at 89.522 kb on - strand, within Atu6074at 89.547 kb on - strand, within Atu6074at 89.555 kb on + strand, within Atu6074at 89.591 kb on - strand, within Atu6074at 89.633 kb on - strand, within Atu6074at 89.705 kb on + strand, within Atu6074at 89.705 kb on + strand, within Atu6074at 89.705 kb on + strand, within Atu6074at 89.705 kb on + strand, within Atu6074at 89.705 kb on + strand, within Atu6074at 89.713 kb on - strandat 89.713 kb on - strandat 89.713 kb on - strandat 89.713 kb on - strandat 89.715 kb on + strandat 89.715 kb on + strandat 89.715 kb on + strandat 89.715 kb on + strandat 89.715 kb on + strandat 89.715 kb on + strandat 89.723 kb on - strandat 89.760 kb on + strandat 89.797 kb on + strandat 89.811 kb on + strandat 89.860 kb on + strandat 89.921 kb on + strandat 89.942 kb on - strandat 89.942 kb on - strandat 90.004 kb on + strand, within Atu6075at 90.080 kb on + strand, within Atu6075at 90.085 kb on + strand, within Atu6075at 90.103 kb on - strand, within Atu6075at 90.110 kb on + strand, within Atu6075at 90.124 kb on + strand, within Atu6075at 90.264 kb on + strand, within Atu6075at 90.296 kb on - strand, within Atu6075at 90.296 kb on - strand, within Atu6075at 90.304 kb on - strand, within Atu6075at 90.306 kb on + strand, within Atu6075at 90.376 kb on + strand, within Atu6075at 90.457 kb on + strand, within Atu6075at 90.506 kb on + strand, within Atu6075at 90.522 kb on - strand, within Atu6075at 90.527 kb on - strand, within Atu6075at 90.536 kb on + strand, within Atu6075at 90.537 kb on - strand, within Atu6075at 90.555 kb on - strand, within Atu6075at 90.586 kb on + strand, within Atu6075at 90.662 kb on + strand, within Atu6075at 90.717 kb on + strand, within Atu6075at 90.821 kb on - strandat 90.857 kb on - strandat 90.860 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
87,269 - Atu6073 0.45 +1.3
87,306 + Atu6073 0.47 +0.5
87,316 + Atu6073 0.48 +2.3
87,316 + Atu6073 0.48 +0.7
87,324 - Atu6073 0.48 +0.8
87,324 - Atu6073 0.48 +1.8
87,324 - Atu6073 0.48 +0.9
87,339 + Atu6073 0.49 +1.9
87,339 + Atu6073 0.49 +2.3
87,345 - Atu6073 0.49 -0.6
87,357 + Atu6073 0.50 -0.0
87,400 + Atu6073 0.53 +0.3
87,474 + Atu6073 0.57 +0.9
87,477 - Atu6073 0.58 +2.8
87,479 + Atu6073 0.58 -0.8
87,531 + Atu6073 0.61 -0.0
87,531 + Atu6073 0.61 +1.0
87,531 + Atu6073 0.61 +3.3
87,531 + Atu6073 0.61 +0.6
87,531 + Atu6073 0.61 +0.8
87,539 - Atu6073 0.62 +0.6
87,539 - Atu6073 0.62 -1.1
87,539 - Atu6073 0.62 +1.7
87,539 - Atu6073 0.62 +0.1
87,539 - Atu6073 0.62 +1.3
87,539 - Atu6073 0.62 +1.7
87,539 - Atu6073 0.62 +1.3
87,545 + Atu6073 0.62 +0.3
87,692 + Atu6073 0.71 -1.6
87,692 + Atu6073 0.71 +0.9
87,700 - Atu6073 0.72 -1.9
87,700 - Atu6073 0.72 -0.1
87,700 - Atu6073 0.72 +0.9
87,817 + Atu6073 0.79 -0.8
87,817 + Atu6073 0.79 -0.6
87,825 - Atu6073 0.79 -0.2
87,830 + Atu6073 0.80 +2.7
87,858 + Atu6073 0.82 +0.9
87,858 + Atu6073 0.82 +0.9
87,866 + Atu6073 0.82 +1.3
87,866 + Atu6073 0.82 +0.5
87,866 - Atu6073 0.82 -0.3
87,874 - Atu6073 0.83 +0.5
87,874 - Atu6073 0.83 +1.7
87,893 + Atu6073 0.84 +0.5
87,893 + Atu6073 0.84 +1.0
87,901 - Atu6073 0.84 +0.1
87,932 + Atu6073 0.86 +0.4
87,957 - Atu6073 0.88 +0.6
87,968 - Atu6073 0.88 -0.6
88,061 - +0.7
88,079 + -0.1
88,189 + +0.9
88,189 + +2.3
88,197 - +1.3
88,321 + +0.8
88,440 - Atu6074 0.14 +0.2
88,474 - Atu6074 0.16 +2.3
88,480 + Atu6074 0.16 +0.3
88,515 + Atu6074 0.18 +0.9
88,540 + Atu6074 0.20 -1.1
88,630 + Atu6074 0.25 -0.8
88,679 - Atu6074 0.28 +2.3
88,690 - Atu6074 0.29 -0.2
88,735 + Atu6074 0.31 +3.3
88,735 + Atu6074 0.31 -0.2
88,739 - Atu6074 0.32 +0.1
88,745 + Atu6074 0.32 +0.7
88,756 + Atu6074 0.33 +2.3
88,756 + Atu6074 0.33 +2.3
88,764 - Atu6074 0.33 +0.1
88,918 + Atu6074 0.42 +0.2
89,021 - Atu6074 0.49 -0.2
89,046 - Atu6074 0.50 -0.3
89,070 + Atu6074 0.52 -1.3
89,070 + Atu6074 0.52 -0.3
89,134 - Atu6074 0.55 -0.2
89,162 + Atu6074 0.57 -0.4
89,162 + Atu6074 0.57 +0.9
89,170 - Atu6074 0.58 +1.7
89,170 - Atu6074 0.58 -0.2
89,221 - Atu6074 0.61 +0.2
89,237 - Atu6074 0.62 -0.3
89,250 + Atu6074 0.62 +0.1
89,256 + Atu6074 0.63 +0.4
89,258 + Atu6074 0.63 +0.2
89,266 - Atu6074 0.63 -0.2
89,328 - Atu6074 0.67 +1.1
89,350 + Atu6074 0.68 -0.7
89,359 - Atu6074 0.69 +0.6
89,384 + Atu6074 0.70 -0.1
89,433 + Atu6074 0.73 +2.0
89,521 + Atu6074 0.79 +0.8
89,522 - Atu6074 0.79 -0.9
89,547 - Atu6074 0.80 +1.7
89,555 + Atu6074 0.81 -0.7
89,591 - Atu6074 0.83 -0.1
89,633 - Atu6074 0.85 +0.1
89,705 + Atu6074 0.90 -1.3
89,705 + Atu6074 0.90 +1.0
89,705 + Atu6074 0.90 +2.0
89,705 + Atu6074 0.90 +1.3
89,705 + Atu6074 0.90 +0.7
89,713 - +2.7
89,713 - +0.7
89,713 - +0.7
89,713 - +0.5
89,715 + +0.7
89,715 + +0.9
89,715 + -0.4
89,715 + -0.3
89,715 + +0.2
89,715 + +2.0
89,723 - -0.6
89,760 + +0.3
89,797 + -0.2
89,811 + -0.3
89,860 + +0.8
89,921 + -0.8
89,942 - -0.2
89,942 - +1.0
90,004 + Atu6075 0.13 -0.2
90,080 + Atu6075 0.22 -0.6
90,085 + Atu6075 0.22 -1.2
90,103 - Atu6075 0.24 +0.5
90,110 + Atu6075 0.25 +0.3
90,124 + Atu6075 0.26 +0.0
90,264 + Atu6075 0.41 -0.6
90,296 - Atu6075 0.44 -0.5
90,296 - Atu6075 0.44 +2.7
90,304 - Atu6075 0.45 +0.2
90,306 + Atu6075 0.46 +1.5
90,376 + Atu6075 0.53 +0.8
90,457 + Atu6075 0.62 -0.1
90,506 + Atu6075 0.67 +1.1
90,522 - Atu6075 0.68 +0.5
90,527 - Atu6075 0.69 -0.5
90,536 + Atu6075 0.70 +0.5
90,537 - Atu6075 0.70 +1.5
90,555 - Atu6075 0.72 +1.7
90,586 + Atu6075 0.75 -1.6
90,662 + Atu6075 0.83 -0.5
90,717 + Atu6075 0.89 +0.1
90,821 - -1.4
90,857 - +1.1
90,860 + +2.3

Or see this region's nucleotide sequence