Strain Fitness in Agrobacterium fabrum C58 around Atu6041

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
49,355	-				+0.2
49,355	-				+1.3
49,506	+				+0.9
49,514	-				+0.9
49,514	-				+0.0
49,526	-				-0.9
49,547	+				+1.1
49,653	-		Atu6039	0.23	-0.7
49,757	+		Atu6039	0.58	+0.2
49,784	+		Atu6039	0.67	-0.6
49,837	-		Atu6039	0.85	+0.5
49,869	-				+0.1
49,870	-				+1.3
49,876	+				+1.7
49,954	-		Atu6040	0.20	+1.2
49,980	-		Atu6040	0.26	+1.7
49,985	-		Atu6040	0.27	-0.4
49,994	+		Atu6040	0.30	-1.9
50,006	+		Atu6040	0.33	-0.8
50,012	-		Atu6040	0.34	+0.3
50,019	+		Atu6040	0.36	+0.7
50,054	+		Atu6040	0.45	-0.2
50,191	-		Atu6040	0.79	+0.6
50,193	+		Atu6040	0.79	-0.5
50,260	-				+0.1
50,302	+				+0.5
50,309	+				-0.2
50,317	-				-0.1
50,317	-				-0.3
50,369	-		Atu6041	0.11	-0.8
50,450	-		Atu6041	0.19	+0.9
50,494	-		Atu6041	0.23	-1.0
50,527	+		Atu6041	0.27	+0.0
50,534	+		Atu6041	0.28	-1.5
50,534	+		Atu6041	0.28	+1.3
50,534	+		Atu6041	0.28	+0.2
50,542	-		Atu6041	0.28	+1.3
50,568	+		Atu6041	0.31	-0.9
50,579	-		Atu6041	0.32	+0.5
50,650	-		Atu6041	0.40	-1.7
50,658	-		Atu6041	0.40	+0.0
50,688	-		Atu6041	0.43	+2.5
50,760	+		Atu6041	0.51	+0.7
50,763	-		Atu6041	0.51	+1.3
50,765	+		Atu6041	0.51	+0.9
50,773	-		Atu6041	0.52	+2.8
50,800	+		Atu6041	0.55	-0.1
50,824	+		Atu6041	0.57	-0.6
50,831	+		Atu6041	0.58	+0.7
50,832	-		Atu6041	0.58	+1.5
50,832	-		Atu6041	0.58	+1.1
50,839	-		Atu6041	0.59	+0.1
50,839	-		Atu6041	0.59	+2.1
50,855	+		Atu6041	0.61	+1.1
50,855	+		Atu6041	0.61	+0.6
50,887	-		Atu6041	0.64	-0.9
51,062	+		Atu6041	0.82	+0.7
51,067	+		Atu6041	0.82	+0.1
51,075	-		Atu6041	0.83	-1.1
51,075	-		Atu6041	0.83	+0.3
51,075	-		Atu6041	0.83	+0.5
51,175	-				-1.0
51,190	+				+0.3
51,190	+				-0.3
51,190	+				+0.8
51,226	+				-0.5
51,252	-				+0.2
51,252	-				+1.7
51,254	+				+0.1
51,275	+				+0.7
51,280	-				+2.3
51,285	-				+1.0
51,300	-		Atu6042	0.10	+0.6
51,366	+		Atu6042	0.21	+1.3
51,371	+		Atu6042	0.22	-0.4
51,491	+		Atu6042	0.40	+3.3
51,491	+		Atu6042	0.40	-0.1
51,492	+		Atu6042	0.41	+2.7
51,542	-		Atu6042	0.48	+0.1
51,551	-		Atu6042	0.50	+0.5
51,557	+		Atu6042	0.51	-0.3
51,564	+		Atu6042	0.52	-0.1
51,564	+		Atu6042	0.52	-0.4
51,567	+		Atu6042	0.52	+1.7
51,567	+		Atu6042	0.52	+0.1
51,572	-		Atu6042	0.53	+0.1
51,599	-		Atu6042	0.57	+0.5
51,711	-		Atu6042	0.75	+1.3
51,738	+		Atu6042	0.79	-0.7
51,746	-		Atu6042	0.81	+0.9
51,752	+		Atu6042	0.81	+0.5
51,778	+		Atu6042	0.86	+0.8
51,820	-				+0.9
51,918	+				+0.3
51,918	+				-0.1
51,926	-				-0.3
51,926	-				+2.3