Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5537 and Atu5538 overlap by 4 nucleotides Atu5538 and Atu5539 are separated by 225 nucleotides
Atu5537: Atu5537 - mercuric reductase, at 532,146 to 533,507
Atu5537
Atu5538: Atu5538 - hypothetical protein, at 533,504 to 533,965
Atu5538
Atu5539: Atu5539 - HlyD family secretion protein, at 534,191 to 535,066
Atu5539
Position (kb) 533
534 Strain fitness (log2 ratio) -1
0
1
2
3 at 532.559 kb on - strand, within Atu5537 at 532.583 kb on - strand, within Atu5537 at 532.697 kb on - strand, within Atu5537 at 532.736 kb on + strand, within Atu5537 at 532.736 kb on + strand, within Atu5537 at 532.758 kb on + strand, within Atu5537 at 532.758 kb on + strand, within Atu5537 at 532.791 kb on + strand, within Atu5537 at 532.829 kb on + strand, within Atu5537 at 532.829 kb on + strand, within Atu5537 at 532.845 kb on + strand, within Atu5537 at 532.848 kb on - strand, within Atu5537 at 532.918 kb on + strand, within Atu5537 at 532.926 kb on - strand, within Atu5537 at 532.926 kb on - strand, within Atu5537 at 533.068 kb on + strand, within Atu5537 at 533.074 kb on - strand, within Atu5537 at 533.113 kb on + strand, within Atu5537 at 533.114 kb on - strand, within Atu5537 at 533.116 kb on + strand, within Atu5537 at 533.116 kb on + strand, within Atu5537 at 533.124 kb on - strand, within Atu5537 at 533.124 kb on - strand, within Atu5537 at 533.124 kb on - strand, within Atu5537 at 533.124 kb on - strand, within Atu5537 at 533.124 kb on - strand, within Atu5537 at 533.124 kb on - strand, within Atu5537 at 533.124 kb on - strand, within Atu5537 at 533.137 kb on + strand, within Atu5537 at 533.145 kb on + strand, within Atu5537 at 533.218 kb on - strand, within Atu5537 at 533.241 kb on - strand, within Atu5537 at 533.263 kb on + strand, within Atu5537 at 533.287 kb on + strand, within Atu5537 at 533.311 kb on + strand, within Atu5537 at 533.343 kb on - strand, within Atu5537 at 533.356 kb on - strand, within Atu5537 at 533.373 kb on - strand at 533.474 kb on - strand at 533.491 kb on + strand at 533.509 kb on - strand at 533.583 kb on - strand, within Atu5538 at 533.617 kb on - strand, within Atu5538 at 533.628 kb on + strand, within Atu5538 at 533.660 kb on - strand, within Atu5538 at 533.678 kb on + strand, within Atu5538 at 533.700 kb on + strand, within Atu5538 at 533.701 kb on - strand, within Atu5538 at 533.735 kb on + strand, within Atu5538 at 533.831 kb on - strand, within Atu5538 at 533.886 kb on + strand, within Atu5538 at 533.910 kb on + strand, within Atu5538 at 534.047 kb on + strand at 534.062 kb on - strand at 534.081 kb on + strand at 534.084 kb on - strand at 534.084 kb on - strand at 534.089 kb on - strand at 534.091 kb on + strand at 534.143 kb on + strand at 534.187 kb on - strand at 534.187 kb on - strand at 534.225 kb on - strand at 534.225 kb on - strand at 534.246 kb on - strand at 534.303 kb on - strand, within Atu5539 at 534.308 kb on - strand, within Atu5539 at 534.339 kb on + strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.426 kb on + strand, within Atu5539 at 534.477 kb on - strand, within Atu5539 at 534.551 kb on + strand, within Atu5539 at 534.597 kb on + strand, within Atu5539 at 534.615 kb on + strand, within Atu5539 at 534.617 kb on - strand, within Atu5539 at 534.640 kb on + strand, within Atu5539 at 534.715 kb on + strand, within Atu5539 at 534.715 kb on - strand, within Atu5539 at 534.771 kb on + strand, within Atu5539 at 534.773 kb on - strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.959 kb on + strand, within Atu5539
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 532,559 - Atu5537 0.30 +0.6 532,583 - Atu5537 0.32 -0.4 532,697 - Atu5537 0.40 +0.1 532,736 + Atu5537 0.43 +0.8 532,736 + Atu5537 0.43 -0.5 532,758 + Atu5537 0.45 +0.2 532,758 + Atu5537 0.45 +0.8 532,791 + Atu5537 0.47 +0.2 532,829 + Atu5537 0.50 +1.2 532,829 + Atu5537 0.50 -0.7 532,845 + Atu5537 0.51 +1.1 532,848 - Atu5537 0.52 +0.3 532,918 + Atu5537 0.57 +1.1 532,926 - Atu5537 0.57 -0.1 532,926 - Atu5537 0.57 +1.1 533,068 + Atu5537 0.68 +0.8 533,074 - Atu5537 0.68 +1.1 533,113 + Atu5537 0.71 +1.1 533,114 - Atu5537 0.71 +0.2 533,116 + Atu5537 0.71 -1.2 533,116 + Atu5537 0.71 +3.1 533,124 - Atu5537 0.72 +0.1 533,124 - Atu5537 0.72 +0.7 533,124 - Atu5537 0.72 +1.0 533,124 - Atu5537 0.72 +0.5 533,124 - Atu5537 0.72 -0.5 533,124 - Atu5537 0.72 +0.2 533,124 - Atu5537 0.72 +0.9 533,137 + Atu5537 0.73 +1.5 533,145 + Atu5537 0.73 +0.2 533,218 - Atu5537 0.79 +2.9 533,241 - Atu5537 0.80 +1.3 533,263 + Atu5537 0.82 +0.8 533,287 + Atu5537 0.84 -0.4 533,311 + Atu5537 0.86 +0.4 533,343 - Atu5537 0.88 +1.1 533,356 - Atu5537 0.89 +0.3 533,373 - +0.7 533,474 - +0.6 533,491 + -0.3 533,509 - -1.2 533,583 - Atu5538 0.17 +1.5 533,617 - Atu5538 0.24 -0.1 533,628 + Atu5538 0.27 +2.1 533,660 - Atu5538 0.34 +0.9 533,678 + Atu5538 0.38 -0.5 533,700 + Atu5538 0.42 +0.3 533,701 - Atu5538 0.43 +2.1 533,735 + Atu5538 0.50 +2.5 533,831 - Atu5538 0.71 +0.5 533,886 + Atu5538 0.83 +0.8 533,910 + Atu5538 0.88 +2.0 534,047 + +1.5 534,062 - -0.3 534,081 + -1.6 534,084 - -0.5 534,084 - +0.1 534,089 - +0.4 534,091 + +1.4 534,143 + +0.3 534,187 - +0.5 534,187 - +0.5 534,225 - +1.7 534,225 - -0.0 534,246 - +0.1 534,303 - Atu5539 0.13 +0.5 534,308 - Atu5539 0.13 -0.5 534,339 + Atu5539 0.17 +0.3 534,422 - Atu5539 0.26 +3.1 534,422 - Atu5539 0.26 +0.8 534,426 + Atu5539 0.27 +0.2 534,477 - Atu5539 0.33 +2.1 534,551 + Atu5539 0.41 -0.5 534,597 + Atu5539 0.46 -0.9 534,615 + Atu5539 0.48 -1.1 534,617 - Atu5539 0.49 +0.3 534,640 + Atu5539 0.51 -0.0 534,715 + Atu5539 0.60 +0.1 534,715 - Atu5539 0.60 -0.2 534,771 + Atu5539 0.66 +1.1 534,773 - Atu5539 0.66 -0.5 534,940 + Atu5539 0.86 -0.8 534,940 + Atu5539 0.86 +1.5 534,959 + Atu5539 0.88 +1.5
Or see this region's nucleotide sequence