Strain Fitness in Agrobacterium fabrum C58 around Atu5515

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5514 and Atu5515 are separated by 218 nucleotidesAtu5515 and Atu5516 overlap by 4 nucleotides Atu5514: Atu5514 - DnaJ family molecular chaperone, at 506,593 to 507,198 Atu5514 Atu5515: Atu5515 - hypothetical protein, at 507,417 to 507,599 Atu5515 Atu5516: Atu5516 - hypothetical protein, at 507,596 to 508,975 Atu5516 Position (kb) 507 508Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 506.429 kb on + strandat 506.442 kb on + strandat 506.499 kb on - strandat 506.669 kb on - strand, within Atu5514at 506.698 kb on - strand, within Atu5514at 506.724 kb on - strand, within Atu5514at 506.749 kb on - strand, within Atu5514at 506.749 kb on - strand, within Atu5514at 506.759 kb on + strand, within Atu5514at 506.767 kb on - strand, within Atu5514at 506.776 kb on + strand, within Atu5514at 506.784 kb on - strand, within Atu5514at 506.788 kb on + strand, within Atu5514at 506.833 kb on + strand, within Atu5514at 506.956 kb on + strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.971 kb on - strand, within Atu5514at 506.979 kb on + strand, within Atu5514at 506.981 kb on - strand, within Atu5514at 506.984 kb on + strand, within Atu5514at 507.023 kb on - strand, within Atu5514at 507.040 kb on - strand, within Atu5514at 507.041 kb on - strand, within Atu5514at 507.077 kb on + strand, within Atu5514at 507.173 kb on + strandat 507.303 kb on - strandat 507.358 kb on + strandat 507.394 kb on - strandat 507.410 kb on + strandat 507.447 kb on + strand, within Atu5515at 507.447 kb on + strand, within Atu5515at 507.447 kb on + strand, within Atu5515at 507.447 kb on + strand, within Atu5515at 507.455 kb on - strand, within Atu5515at 507.455 kb on - strand, within Atu5515at 507.569 kb on - strand, within Atu5515at 507.571 kb on + strand, within Atu5515at 507.580 kb on - strand, within Atu5515at 507.607 kb on + strandat 507.627 kb on - strandat 507.627 kb on - strandat 507.712 kb on + strandat 507.769 kb on + strand, within Atu5516at 507.777 kb on - strand, within Atu5516at 507.777 kb on - strand, within Atu5516at 507.777 kb on - strand, within Atu5516at 507.785 kb on - strand, within Atu5516at 507.832 kb on + strand, within Atu5516at 507.852 kb on + strand, within Atu5516at 507.862 kb on + strand, within Atu5516at 507.864 kb on + strand, within Atu5516at 507.904 kb on - strand, within Atu5516at 507.904 kb on - strand, within Atu5516at 507.975 kb on + strand, within Atu5516at 508.064 kb on - strand, within Atu5516at 508.068 kb on - strand, within Atu5516at 508.082 kb on - strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.115 kb on + strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.123 kb on - strand, within Atu5516at 508.146 kb on - strand, within Atu5516at 508.156 kb on + strand, within Atu5516at 508.182 kb on + strand, within Atu5516at 508.182 kb on + strand, within Atu5516at 508.182 kb on + strand, within Atu5516at 508.190 kb on - strand, within Atu5516at 508.190 kb on - strand, within Atu5516at 508.203 kb on + strand, within Atu5516at 508.257 kb on + strand, within Atu5516at 508.333 kb on + strand, within Atu5516at 508.390 kb on - strand, within Atu5516at 508.392 kb on + strand, within Atu5516at 508.423 kb on - strand, within Atu5516at 508.505 kb on + strand, within Atu5516at 508.533 kb on + strand, within Atu5516at 508.548 kb on + strand, within Atu5516at 508.556 kb on - strand, within Atu5516at 508.556 kb on - strand, within Atu5516

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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506,429 + +0.7
506,442 + +0.6
506,499 - -0.6
506,669 - Atu5514 0.13 +0.6
506,698 - Atu5514 0.17 +0.7
506,724 - Atu5514 0.22 +3.7
506,749 - Atu5514 0.26 +1.3
506,749 - Atu5514 0.26 +1.8
506,759 + Atu5514 0.27 +3.1
506,767 - Atu5514 0.29 +1.2
506,776 + Atu5514 0.30 -0.4
506,784 - Atu5514 0.32 +1.1
506,788 + Atu5514 0.32 +0.5
506,833 + Atu5514 0.40 +0.3
506,956 + Atu5514 0.60 +0.8
506,971 - Atu5514 0.62 +0.5
506,971 - Atu5514 0.62 +0.9
506,971 - Atu5514 0.62 +0.5
506,971 - Atu5514 0.62 -0.9
506,979 + Atu5514 0.64 +0.5
506,981 - Atu5514 0.64 +0.4
506,984 + Atu5514 0.65 +3.1
507,023 - Atu5514 0.71 +1.1
507,040 - Atu5514 0.74 -0.7
507,041 - Atu5514 0.74 +0.7
507,077 + Atu5514 0.80 +1.4
507,173 + +0.6
507,303 - -0.2
507,358 + -0.9
507,394 - +1.1
507,410 + -0.3
507,447 + Atu5515 0.16 -0.2
507,447 + Atu5515 0.16 -1.5
507,447 + Atu5515 0.16 +1.1
507,447 + Atu5515 0.16 -0.9
507,455 - Atu5515 0.21 -0.9
507,455 - Atu5515 0.21 -0.4
507,569 - Atu5515 0.83 -0.2
507,571 + Atu5515 0.84 -0.2
507,580 - Atu5515 0.89 -0.7
507,607 + -1.9
507,627 - -0.1
507,627 - +0.6
507,712 + +1.4
507,769 + Atu5516 0.13 +1.3
507,777 - Atu5516 0.13 +1.1
507,777 - Atu5516 0.13 -0.0
507,777 - Atu5516 0.13 -0.9
507,785 - Atu5516 0.14 +1.1
507,832 + Atu5516 0.17 -0.2
507,852 + Atu5516 0.19 +4.1
507,862 + Atu5516 0.19 +0.2
507,864 + Atu5516 0.19 -0.1
507,904 - Atu5516 0.22 -0.6
507,904 - Atu5516 0.22 +0.6
507,975 + Atu5516 0.27 +3.1
508,064 - Atu5516 0.34 +1.5
508,068 - Atu5516 0.34 +0.4
508,082 - Atu5516 0.35 -0.2
508,115 + Atu5516 0.38 +0.2
508,115 + Atu5516 0.38 +1.2
508,115 + Atu5516 0.38 +0.3
508,115 + Atu5516 0.38 -0.8
508,115 + Atu5516 0.38 +0.6
508,115 + Atu5516 0.38 -0.4
508,115 + Atu5516 0.38 +0.1
508,115 + Atu5516 0.38 +1.5
508,115 + Atu5516 0.38 -0.4
508,115 + Atu5516 0.38 +1.5
508,115 + Atu5516 0.38 +0.1
508,115 + Atu5516 0.38 +1.3
508,123 - Atu5516 0.38 +0.2
508,123 - Atu5516 0.38 +0.8
508,123 - Atu5516 0.38 +0.3
508,123 - Atu5516 0.38 +0.6
508,123 - Atu5516 0.38 -0.9
508,123 - Atu5516 0.38 +2.1
508,123 - Atu5516 0.38 -0.1
508,123 - Atu5516 0.38 +1.1
508,123 - Atu5516 0.38 -0.3
508,123 - Atu5516 0.38 +0.3
508,123 - Atu5516 0.38 +1.3
508,123 - Atu5516 0.38 +1.4
508,123 - Atu5516 0.38 +0.6
508,123 - Atu5516 0.38 -0.2
508,146 - Atu5516 0.40 +0.6
508,156 + Atu5516 0.41 -0.1
508,182 + Atu5516 0.42 +2.5
508,182 + Atu5516 0.42 +0.8
508,182 + Atu5516 0.42 +0.5
508,190 - Atu5516 0.43 +0.3
508,190 - Atu5516 0.43 -0.1
508,203 + Atu5516 0.44 +1.1
508,257 + Atu5516 0.48 +0.5
508,333 + Atu5516 0.53 -0.1
508,390 - Atu5516 0.58 +0.0
508,392 + Atu5516 0.58 +1.1
508,423 - Atu5516 0.60 -0.0
508,505 + Atu5516 0.66 -0.1
508,533 + Atu5516 0.68 +3.1
508,548 + Atu5516 0.69 -0.1
508,556 - Atu5516 0.70 -0.3
508,556 - Atu5516 0.70 +0.4

Or see this region's nucleotide sequence