Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5478 and Atu5479 overlap by 4 nucleotides Atu5479 and Atu5480 are separated by 13 nucleotides Atu5480 and Atu5481 overlap by 4 nucleotides
Atu5478: Atu5478 - chloromuconate cycloisomerase, at 470,044 to 471,141
Atu5478
Atu5479: Atu5479 - acetylornithine deacetylase, at 471,138 to 472,301
Atu5479
Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079
Atu5480
Atu5481: Atu5481 - ABC transporter membrane spanning protein, at 473,076 to 473,804
Atu5481
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 470.307 kb on + strand, within Atu5478 at 470.435 kb on + strand, within Atu5478 at 470.443 kb on - strand, within Atu5478 at 470.498 kb on - strand, within Atu5478 at 470.498 kb on - strand, within Atu5478 at 470.501 kb on - strand, within Atu5478 at 470.546 kb on + strand, within Atu5478 at 470.559 kb on - strand, within Atu5478 at 470.588 kb on - strand, within Atu5478 at 470.626 kb on + strand, within Atu5478 at 470.661 kb on + strand, within Atu5478 at 470.662 kb on - strand, within Atu5478 at 470.669 kb on - strand, within Atu5478 at 470.726 kb on + strand, within Atu5478 at 470.726 kb on + strand, within Atu5478 at 470.734 kb on - strand, within Atu5478 at 470.792 kb on - strand, within Atu5478 at 470.796 kb on + strand, within Atu5478 at 470.804 kb on - strand, within Atu5478 at 470.804 kb on - strand, within Atu5478 at 470.837 kb on + strand, within Atu5478 at 470.893 kb on - strand, within Atu5478 at 470.894 kb on - strand, within Atu5478 at 470.932 kb on - strand, within Atu5478 at 470.954 kb on + strand, within Atu5478 at 470.954 kb on + strand, within Atu5478 at 470.961 kb on + strand, within Atu5478 at 470.961 kb on + strand, within Atu5478 at 470.962 kb on - strand, within Atu5478 at 470.962 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.969 kb on - strand, within Atu5478 at 470.975 kb on - strand, within Atu5478 at 471.030 kb on + strand, within Atu5478 at 471.088 kb on - strand at 471.114 kb on + strand at 471.122 kb on - strand at 471.124 kb on + strand at 471.127 kb on - strand at 471.226 kb on + strand at 471.247 kb on - strand at 471.262 kb on + strand, within Atu5479 at 471.267 kb on + strand, within Atu5479 at 471.337 kb on + strand, within Atu5479 at 471.350 kb on + strand, within Atu5479 at 471.359 kb on + strand, within Atu5479 at 471.359 kb on + strand, within Atu5479 at 471.360 kb on - strand, within Atu5479 at 471.411 kb on + strand, within Atu5479 at 471.524 kb on + strand, within Atu5479 at 471.600 kb on + strand, within Atu5479 at 471.600 kb on + strand, within Atu5479 at 471.607 kb on - strand, within Atu5479 at 471.655 kb on - strand, within Atu5479 at 471.660 kb on + strand, within Atu5479 at 471.661 kb on + strand, within Atu5479 at 471.688 kb on + strand, within Atu5479 at 471.757 kb on + strand, within Atu5479 at 471.758 kb on - strand, within Atu5479 at 471.765 kb on - strand, within Atu5479 at 471.771 kb on + strand, within Atu5479 at 471.771 kb on + strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.779 kb on - strand, within Atu5479 at 471.806 kb on - strand, within Atu5479 at 471.826 kb on - strand, within Atu5479 at 471.878 kb on + strand, within Atu5479 at 471.905 kb on - strand, within Atu5479 at 471.907 kb on + strand, within Atu5479 at 471.912 kb on + strand, within Atu5479 at 471.949 kb on + strand, within Atu5479 at 471.949 kb on + strand, within Atu5479 at 472.025 kb on + strand, within Atu5479 at 472.042 kb on + strand, within Atu5479 at 472.163 kb on + strand, within Atu5479 at 472.318 kb on + strand at 472.498 kb on - strand, within Atu5480 at 472.518 kb on - strand, within Atu5480 at 472.518 kb on - strand, within Atu5480 at 472.537 kb on - strand, within Atu5480 at 472.542 kb on + strand, within Atu5480 at 472.557 kb on - strand, within Atu5480 at 472.564 kb on + strand, within Atu5480 at 472.727 kb on + strand, within Atu5480 at 472.762 kb on + strand, within Atu5480 at 472.896 kb on + strand, within Atu5480 at 472.904 kb on - strand, within Atu5480 at 472.913 kb on + strand, within Atu5480 at 472.946 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 473.121 kb on + strand at 473.178 kb on - strand, within Atu5481 at 473.243 kb on - strand, within Atu5481
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 470,307 + Atu5478 0.24 +0.5 470,435 + Atu5478 0.36 -0.5 470,443 - Atu5478 0.36 +1.0 470,498 - Atu5478 0.41 +2.0 470,498 - Atu5478 0.41 +1.3 470,501 - Atu5478 0.42 -0.4 470,546 + Atu5478 0.46 -0.3 470,559 - Atu5478 0.47 +0.8 470,588 - Atu5478 0.50 +0.8 470,626 + Atu5478 0.53 -0.5 470,661 + Atu5478 0.56 -0.4 470,662 - Atu5478 0.56 +1.9 470,669 - Atu5478 0.57 -2.2 470,726 + Atu5478 0.62 -0.2 470,726 + Atu5478 0.62 +0.6 470,734 - Atu5478 0.63 -0.4 470,792 - Atu5478 0.68 -0.0 470,796 + Atu5478 0.68 +0.1 470,804 - Atu5478 0.69 +2.1 470,804 - Atu5478 0.69 +0.6 470,837 + Atu5478 0.72 +0.5 470,893 - Atu5478 0.77 -0.2 470,894 - Atu5478 0.77 +4.1 470,932 - Atu5478 0.81 +1.9 470,954 + Atu5478 0.83 +0.4 470,954 + Atu5478 0.83 +0.8 470,961 + Atu5478 0.84 +2.7 470,961 + Atu5478 0.84 +0.6 470,962 - Atu5478 0.84 +2.0 470,962 - Atu5478 0.84 +0.5 470,969 - Atu5478 0.84 +0.9 470,969 - Atu5478 0.84 -0.1 470,969 - Atu5478 0.84 -0.1 470,969 - Atu5478 0.84 +3.1 470,969 - Atu5478 0.84 -0.5 470,975 - Atu5478 0.85 +0.8 471,030 + Atu5478 0.90 +0.2 471,088 - +1.1 471,114 + +2.5 471,122 - +1.1 471,124 + +0.2 471,127 - -0.4 471,226 + -0.1 471,247 - +0.2 471,262 + Atu5479 0.11 +1.1 471,267 + Atu5479 0.11 +0.9 471,337 + Atu5479 0.17 +0.4 471,350 + Atu5479 0.18 +0.7 471,359 + Atu5479 0.19 +1.1 471,359 + Atu5479 0.19 +2.1 471,360 - Atu5479 0.19 +0.4 471,411 + Atu5479 0.23 +0.6 471,524 + Atu5479 0.33 +0.9 471,600 + Atu5479 0.40 -0.8 471,600 + Atu5479 0.40 +0.1 471,607 - Atu5479 0.40 +0.5 471,655 - Atu5479 0.44 +1.3 471,660 + Atu5479 0.45 -0.5 471,661 + Atu5479 0.45 -1.0 471,688 + Atu5479 0.47 -0.2 471,757 + Atu5479 0.53 +0.2 471,758 - Atu5479 0.53 -1.2 471,765 - Atu5479 0.54 -0.2 471,771 + Atu5479 0.54 -0.7 471,771 + Atu5479 0.54 +1.4 471,779 - Atu5479 0.55 +0.2 471,779 - Atu5479 0.55 -1.9 471,779 - Atu5479 0.55 +1.0 471,779 - Atu5479 0.55 +2.1 471,779 - Atu5479 0.55 +2.1 471,779 - Atu5479 0.55 -1.2 471,806 - Atu5479 0.57 -0.8 471,826 - Atu5479 0.59 -0.3 471,878 + Atu5479 0.64 +1.5 471,905 - Atu5479 0.66 +0.8 471,907 + Atu5479 0.66 +1.5 471,912 + Atu5479 0.66 +1.4 471,949 + Atu5479 0.70 -0.1 471,949 + Atu5479 0.70 +1.5 472,025 + Atu5479 0.76 +0.6 472,042 + Atu5479 0.78 -0.6 472,163 + Atu5479 0.88 -0.9 472,318 + -0.7 472,498 - Atu5480 0.24 +0.2 472,518 - Atu5480 0.27 +0.5 472,518 - Atu5480 0.27 +1.6 472,537 - Atu5480 0.29 +1.5 472,542 + Atu5480 0.30 +0.4 472,557 - Atu5480 0.32 +0.9 472,564 + Atu5480 0.33 +0.1 472,727 + Atu5480 0.54 +0.5 472,762 + Atu5480 0.58 +0.8 472,896 + Atu5480 0.76 +2.1 472,904 - Atu5480 0.77 +2.5 472,913 + Atu5480 0.78 +3.5 472,946 - Atu5480 0.82 +1.4 472,979 - Atu5480 0.87 +0.2 472,979 - Atu5480 0.87 +3.4 473,121 + -1.2 473,178 - Atu5481 0.14 +0.5 473,243 - Atu5481 0.23 +0.1
Or see this region's nucleotide sequence