Strain Fitness in Agrobacterium fabrum C58 around Atu5478

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5477 and Atu5478 overlap by 4 nucleotidesAtu5478 and Atu5479 overlap by 4 nucleotides Atu5477: Atu5477 - peptidase, at 468,878 to 470,047 Atu5477 Atu5478: Atu5478 - chloromuconate cycloisomerase, at 470,044 to 471,141 Atu5478 Atu5479: Atu5479 - acetylornithine deacetylase, at 471,138 to 472,301 Atu5479 Position (kb) 470 471 472Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 469.120 kb on + strand, within Atu5477at 469.147 kb on + strand, within Atu5477at 469.171 kb on - strand, within Atu5477at 469.171 kb on - strand, within Atu5477at 469.219 kb on + strand, within Atu5477at 469.230 kb on - strand, within Atu5477at 469.251 kb on + strand, within Atu5477at 469.268 kb on + strand, within Atu5477at 469.268 kb on + strand, within Atu5477at 469.276 kb on - strand, within Atu5477at 469.291 kb on - strand, within Atu5477at 469.335 kb on + strand, within Atu5477at 469.359 kb on - strand, within Atu5477at 469.388 kb on - strand, within Atu5477at 469.419 kb on - strand, within Atu5477at 469.421 kb on + strand, within Atu5477at 469.426 kb on + strand, within Atu5477at 469.451 kb on + strand, within Atu5477at 469.451 kb on + strand, within Atu5477at 469.521 kb on + strand, within Atu5477at 469.531 kb on - strand, within Atu5477at 469.581 kb on + strand, within Atu5477at 469.581 kb on + strand, within Atu5477at 469.631 kb on + strand, within Atu5477at 469.631 kb on + strand, within Atu5477at 469.639 kb on + strand, within Atu5477at 469.639 kb on - strand, within Atu5477at 469.639 kb on - strand, within Atu5477at 469.676 kb on - strand, within Atu5477at 469.687 kb on - strand, within Atu5477at 469.748 kb on - strand, within Atu5477at 469.752 kb on - strand, within Atu5477at 470.038 kb on + strandat 470.075 kb on - strandat 470.307 kb on + strand, within Atu5478at 470.435 kb on + strand, within Atu5478at 470.443 kb on - strand, within Atu5478at 470.498 kb on - strand, within Atu5478at 470.498 kb on - strand, within Atu5478at 470.501 kb on - strand, within Atu5478at 470.546 kb on + strand, within Atu5478at 470.559 kb on - strand, within Atu5478at 470.588 kb on - strand, within Atu5478at 470.626 kb on + strand, within Atu5478at 470.661 kb on + strand, within Atu5478at 470.662 kb on - strand, within Atu5478at 470.669 kb on - strand, within Atu5478at 470.726 kb on + strand, within Atu5478at 470.726 kb on + strand, within Atu5478at 470.734 kb on - strand, within Atu5478at 470.792 kb on - strand, within Atu5478at 470.796 kb on + strand, within Atu5478at 470.804 kb on - strand, within Atu5478at 470.804 kb on - strand, within Atu5478at 470.837 kb on + strand, within Atu5478at 470.893 kb on - strand, within Atu5478at 470.894 kb on - strand, within Atu5478at 470.932 kb on - strand, within Atu5478at 470.954 kb on + strand, within Atu5478at 470.954 kb on + strand, within Atu5478at 470.961 kb on + strand, within Atu5478at 470.961 kb on + strand, within Atu5478at 470.962 kb on - strand, within Atu5478at 470.962 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.975 kb on - strand, within Atu5478at 471.030 kb on + strand, within Atu5478at 471.088 kb on - strandat 471.114 kb on + strandat 471.122 kb on - strandat 471.124 kb on + strandat 471.127 kb on - strandat 471.226 kb on + strandat 471.247 kb on - strandat 471.262 kb on + strand, within Atu5479at 471.267 kb on + strand, within Atu5479at 471.337 kb on + strand, within Atu5479at 471.350 kb on + strand, within Atu5479at 471.359 kb on + strand, within Atu5479at 471.359 kb on + strand, within Atu5479at 471.360 kb on - strand, within Atu5479at 471.411 kb on + strand, within Atu5479at 471.524 kb on + strand, within Atu5479at 471.600 kb on + strand, within Atu5479at 471.600 kb on + strand, within Atu5479at 471.607 kb on - strand, within Atu5479at 471.655 kb on - strand, within Atu5479at 471.660 kb on + strand, within Atu5479at 471.661 kb on + strand, within Atu5479at 471.688 kb on + strand, within Atu5479at 471.757 kb on + strand, within Atu5479at 471.758 kb on - strand, within Atu5479at 471.765 kb on - strand, within Atu5479at 471.771 kb on + strand, within Atu5479at 471.771 kb on + strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.806 kb on - strand, within Atu5479at 471.826 kb on - strand, within Atu5479at 471.878 kb on + strand, within Atu5479at 471.905 kb on - strand, within Atu5479at 471.907 kb on + strand, within Atu5479at 471.912 kb on + strand, within Atu5479at 471.949 kb on + strand, within Atu5479at 471.949 kb on + strand, within Atu5479at 472.025 kb on + strand, within Atu5479at 472.042 kb on + strand, within Atu5479

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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469,120 + Atu5477 0.21 +0.8
469,147 + Atu5477 0.23 -0.3
469,171 - Atu5477 0.25 +1.8
469,171 - Atu5477 0.25 -0.8
469,219 + Atu5477 0.29 +0.0
469,230 - Atu5477 0.30 +1.0
469,251 + Atu5477 0.32 +0.6
469,268 + Atu5477 0.33 +1.2
469,268 + Atu5477 0.33 +1.4
469,276 - Atu5477 0.34 -0.9
469,291 - Atu5477 0.35 +0.2
469,335 + Atu5477 0.39 +0.5
469,359 - Atu5477 0.41 +0.7
469,388 - Atu5477 0.44 -0.1
469,419 - Atu5477 0.46 +0.7
469,421 + Atu5477 0.46 +0.9
469,426 + Atu5477 0.47 +0.3
469,451 + Atu5477 0.49 +0.5
469,451 + Atu5477 0.49 +0.8
469,521 + Atu5477 0.55 -0.9
469,531 - Atu5477 0.56 +1.1
469,581 + Atu5477 0.60 -0.3
469,581 + Atu5477 0.60 -1.4
469,631 + Atu5477 0.64 +1.3
469,631 + Atu5477 0.64 +1.9
469,639 + Atu5477 0.65 +1.1
469,639 - Atu5477 0.65 -0.2
469,639 - Atu5477 0.65 -0.5
469,676 - Atu5477 0.68 +0.3
469,687 - Atu5477 0.69 +2.1
469,748 - Atu5477 0.74 +1.5
469,752 - Atu5477 0.75 -0.1
470,038 + +1.5
470,075 - +1.9
470,307 + Atu5478 0.24 +0.5
470,435 + Atu5478 0.36 -0.5
470,443 - Atu5478 0.36 +1.0
470,498 - Atu5478 0.41 +2.0
470,498 - Atu5478 0.41 +1.3
470,501 - Atu5478 0.42 -0.4
470,546 + Atu5478 0.46 -0.3
470,559 - Atu5478 0.47 +0.9
470,588 - Atu5478 0.50 +0.8
470,626 + Atu5478 0.53 -0.5
470,661 + Atu5478 0.56 -0.4
470,662 - Atu5478 0.56 +1.9
470,669 - Atu5478 0.57 -2.1
470,726 + Atu5478 0.62 -0.2
470,726 + Atu5478 0.62 +0.6
470,734 - Atu5478 0.63 -0.4
470,792 - Atu5478 0.68 -0.0
470,796 + Atu5478 0.68 +0.1
470,804 - Atu5478 0.69 +2.1
470,804 - Atu5478 0.69 +0.6
470,837 + Atu5478 0.72 +0.5
470,893 - Atu5478 0.77 -0.2
470,894 - Atu5478 0.77 +4.1
470,932 - Atu5478 0.81 +1.9
470,954 + Atu5478 0.83 +0.4
470,954 + Atu5478 0.83 +0.8
470,961 + Atu5478 0.84 +2.7
470,961 + Atu5478 0.84 +0.6
470,962 - Atu5478 0.84 +2.0
470,962 - Atu5478 0.84 +0.5
470,969 - Atu5478 0.84 +0.9
470,969 - Atu5478 0.84 -0.1
470,969 - Atu5478 0.84 -0.1
470,969 - Atu5478 0.84 +3.1
470,969 - Atu5478 0.84 -0.5
470,975 - Atu5478 0.85 +0.8
471,030 + Atu5478 0.90 +0.3
471,088 - +1.1
471,114 + +2.5
471,122 - +1.1
471,124 + +0.2
471,127 - -0.4
471,226 + -0.1
471,247 - +0.2
471,262 + Atu5479 0.11 +1.1
471,267 + Atu5479 0.11 +0.9
471,337 + Atu5479 0.17 +0.4
471,350 + Atu5479 0.18 +0.7
471,359 + Atu5479 0.19 +1.1
471,359 + Atu5479 0.19 +2.1
471,360 - Atu5479 0.19 +0.4
471,411 + Atu5479 0.23 +0.6
471,524 + Atu5479 0.33 +0.9
471,600 + Atu5479 0.40 -0.8
471,600 + Atu5479 0.40 +0.1
471,607 - Atu5479 0.40 +0.5
471,655 - Atu5479 0.44 +1.3
471,660 + Atu5479 0.45 -0.5
471,661 + Atu5479 0.45 -1.0
471,688 + Atu5479 0.47 -0.2
471,757 + Atu5479 0.53 +0.2
471,758 - Atu5479 0.53 -1.2
471,765 - Atu5479 0.54 -0.2
471,771 + Atu5479 0.54 -0.7
471,771 + Atu5479 0.54 +1.4
471,779 - Atu5479 0.55 +0.2
471,779 - Atu5479 0.55 -1.9
471,779 - Atu5479 0.55 +1.0
471,779 - Atu5479 0.55 +2.1
471,779 - Atu5479 0.55 +2.1
471,779 - Atu5479 0.55 -1.2
471,806 - Atu5479 0.57 -0.8
471,826 - Atu5479 0.59 -0.3
471,878 + Atu5479 0.64 +1.5
471,905 - Atu5479 0.66 +0.8
471,907 + Atu5479 0.66 +1.5
471,912 + Atu5479 0.66 +1.4
471,949 + Atu5479 0.70 -0.1
471,949 + Atu5479 0.70 +1.5
472,025 + Atu5479 0.76 +0.6
472,042 + Atu5479 0.78 -0.6

Or see this region's nucleotide sequence