Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5460 and Atu5461 are separated by 10 nucleotides Atu5461 and Atu5462 are separated by 2 nucleotides
Atu5460: Atu5460 - ABC transporter membrane spanning protein, at 452,862 to 453,788
Atu5460
Atu5461: Atu5461 - ABC transporter membrane spanning protein, at 453,799 to 454,629
Atu5461
Atu5462: Atu5462 - ABC transporter nucleotide binding/ATPase, at 454,632 to 455,714
Atu5462
Position (kb) 453
454
455 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 452.807 kb on + strand at 452.824 kb on + strand at 452.830 kb on - strand at 452.935 kb on + strand at 452.935 kb on + strand at 452.943 kb on - strand at 452.966 kb on - strand, within Atu5460 at 452.966 kb on - strand, within Atu5460 at 452.966 kb on - strand, within Atu5460 at 453.031 kb on - strand, within Atu5460 at 453.071 kb on + strand, within Atu5460 at 453.073 kb on + strand, within Atu5460 at 453.082 kb on - strand, within Atu5460 at 453.118 kb on + strand, within Atu5460 at 453.124 kb on + strand, within Atu5460 at 453.124 kb on + strand, within Atu5460 at 453.134 kb on + strand, within Atu5460 at 453.134 kb on + strand, within Atu5460 at 453.163 kb on + strand, within Atu5460 at 453.232 kb on - strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.239 kb on + strand, within Atu5460 at 453.242 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.247 kb on - strand, within Atu5460 at 453.269 kb on + strand, within Atu5460 at 453.354 kb on - strand, within Atu5460 at 453.412 kb on - strand, within Atu5460 at 453.463 kb on - strand, within Atu5460 at 453.510 kb on - strand, within Atu5460 at 453.564 kb on - strand, within Atu5460 at 453.578 kb on + strand, within Atu5460 at 453.578 kb on + strand, within Atu5460 at 453.586 kb on - strand, within Atu5460 at 453.642 kb on + strand, within Atu5460 at 453.672 kb on - strand, within Atu5460 at 453.717 kb on + strand at 453.726 kb on + strand at 453.820 kb on + strand at 453.829 kb on + strand at 453.863 kb on - strand at 453.983 kb on - strand, within Atu5461 at 454.006 kb on - strand, within Atu5461 at 454.100 kb on + strand, within Atu5461 at 454.103 kb on - strand, within Atu5461 at 454.108 kb on - strand, within Atu5461 at 454.124 kb on - strand, within Atu5461 at 454.267 kb on + strand, within Atu5461 at 454.298 kb on + strand, within Atu5461 at 454.348 kb on - strand, within Atu5461 at 454.348 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.416 kb on - strand, within Atu5461 at 454.418 kb on + strand, within Atu5461 at 454.423 kb on + strand, within Atu5461 at 454.426 kb on - strand, within Atu5461 at 454.427 kb on + strand, within Atu5461 at 454.431 kb on - strand, within Atu5461 at 454.498 kb on - strand, within Atu5461 at 454.555 kb on + strand at 454.578 kb on - strand at 454.728 kb on + strand at 454.842 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 455.068 kb on + strand, within Atu5462 at 455.122 kb on - strand, within Atu5462 at 455.125 kb on + strand, within Atu5462 at 455.168 kb on + strand, within Atu5462 at 455.221 kb on - strand, within Atu5462 at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 452,807 + +0.8 452,824 + +0.2 452,830 - -0.9 452,935 + +0.2 452,935 + -0.1 452,943 - +0.5 452,966 - Atu5460 0.11 +0.3 452,966 - Atu5460 0.11 +0.8 452,966 - Atu5460 0.11 -0.3 453,031 - Atu5460 0.18 +4.7 453,071 + Atu5460 0.23 +0.3 453,073 + Atu5460 0.23 +3.1 453,082 - Atu5460 0.24 -0.6 453,118 + Atu5460 0.28 -0.2 453,124 + Atu5460 0.28 +0.8 453,124 + Atu5460 0.28 -2.0 453,134 + Atu5460 0.29 -0.4 453,134 + Atu5460 0.29 +0.5 453,163 + Atu5460 0.32 +0.8 453,232 - Atu5460 0.40 +0.5 453,239 + Atu5460 0.41 +0.1 453,239 + Atu5460 0.41 +2.1 453,239 + Atu5460 0.41 -0.3 453,239 + Atu5460 0.41 +2.4 453,239 + Atu5460 0.41 -0.1 453,239 + Atu5460 0.41 -0.0 453,239 + Atu5460 0.41 +0.2 453,239 + Atu5460 0.41 -0.3 453,239 + Atu5460 0.41 +0.8 453,239 + Atu5460 0.41 -0.0 453,239 + Atu5460 0.41 -0.6 453,239 + Atu5460 0.41 -0.2 453,239 + Atu5460 0.41 +0.1 453,239 + Atu5460 0.41 +0.5 453,242 - Atu5460 0.41 -0.6 453,247 - Atu5460 0.42 -0.5 453,247 - Atu5460 0.42 -1.3 453,247 - Atu5460 0.42 +0.9 453,247 - Atu5460 0.42 -0.7 453,247 - Atu5460 0.42 +2.4 453,247 - Atu5460 0.42 +1.0 453,247 - Atu5460 0.42 +2.1 453,247 - Atu5460 0.42 +2.1 453,247 - Atu5460 0.42 -0.2 453,247 - Atu5460 0.42 -1.9 453,247 - Atu5460 0.42 +1.1 453,269 + Atu5460 0.44 +1.8 453,354 - Atu5460 0.53 +0.5 453,412 - Atu5460 0.59 -0.1 453,463 - Atu5460 0.65 -0.7 453,510 - Atu5460 0.70 +0.5 453,564 - Atu5460 0.76 -0.1 453,578 + Atu5460 0.77 +1.5 453,578 + Atu5460 0.77 -0.6 453,586 - Atu5460 0.78 +0.4 453,642 + Atu5460 0.84 -0.9 453,672 - Atu5460 0.87 -2.5 453,717 + +0.7 453,726 + +0.3 453,820 + -0.2 453,829 + +3.7 453,863 - -0.1 453,983 - Atu5461 0.22 +2.4 454,006 - Atu5461 0.25 +0.0 454,100 + Atu5461 0.36 +0.5 454,103 - Atu5461 0.37 +1.6 454,108 - Atu5461 0.37 +1.1 454,124 - Atu5461 0.39 +0.8 454,267 + Atu5461 0.56 +0.6 454,298 + Atu5461 0.60 +0.6 454,348 - Atu5461 0.66 +1.1 454,348 - Atu5461 0.66 -0.1 454,404 - Atu5461 0.73 +0.4 454,404 - Atu5461 0.73 +0.3 454,404 - Atu5461 0.73 +0.3 454,416 - Atu5461 0.74 +0.5 454,418 + Atu5461 0.74 -0.1 454,423 + Atu5461 0.75 +3.1 454,426 - Atu5461 0.75 -0.1 454,427 + Atu5461 0.76 +0.5 454,431 - Atu5461 0.76 +0.8 454,498 - Atu5461 0.84 +0.4 454,555 + +0.6 454,578 - +0.8 454,728 + +0.5 454,842 + Atu5462 0.19 -0.4 454,952 + Atu5462 0.30 +1.5 454,952 + Atu5462 0.30 +0.5 454,954 - Atu5462 0.30 -0.4 454,954 - Atu5462 0.30 -0.7 455,068 + Atu5462 0.40 +3.1 455,122 - Atu5462 0.45 +1.1 455,125 + Atu5462 0.46 +1.5 455,168 + Atu5462 0.49 +0.3 455,221 - Atu5462 0.54 -0.3 455,623 + +0.3 455,623 + +2.6 455,623 + -0.6 455,623 + -0.5 455,623 + +0.8
Or see this region's nucleotide sequence