Strain Fitness in Agrobacterium fabrum C58 around Atu5081

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
80,894	-				+0.5
80,917	-				+0.1
80,919	-				+0.6
80,919	-				+0.3
80,929	-				+0.2
80,956	+				+0.3
80,985	+				+1.1
80,985	+				+0.4
81,013	-				-0.4
81,018	-				-0.5
81,148	+		Atu5080	0.24	+0.4
81,203	-		Atu5080	0.30	-1.5
81,263	+		Atu5080	0.36	+0.2
81,263	+		Atu5080	0.36	-0.3
81,271	-		Atu5080	0.37	-0.6
81,271	-		Atu5080	0.37	-1.0
81,271	-		Atu5080	0.37	-0.6
81,347	-		Atu5080	0.45	+0.3
81,384	-		Atu5080	0.49	-0.5
81,395	+		Atu5080	0.50	+0.5
81,442	+		Atu5080	0.55	-0.5
81,442	+		Atu5080	0.55	-0.5
81,442	+		Atu5080	0.55	+0.8
81,770	-				-0.0
81,808	+				+0.7
81,816	-				+0.2
81,820	+				+0.8
81,820	+				+0.9
81,820	+				-0.1
81,828	-				-0.7
81,839	+				-0.0
81,867	+				+0.3
81,875	-				+0.5
81,949	-		Atu5081	0.10	+0.4
82,114	+		Atu5081	0.29	+0.8
82,127	-		Atu5081	0.31	+1.4
82,212	-		Atu5081	0.40	+0.6
82,272	-		Atu5081	0.47	+2.1
82,326	+		Atu5081	0.53	+1.5
82,326	+		Atu5081	0.53	-0.0
82,380	+		Atu5081	0.59	+1.5
82,452	+		Atu5081	0.68	+1.1
82,452	+		Atu5081	0.68	+0.4
82,460	-		Atu5081	0.68	+0.1
82,460	-		Atu5081	0.68	+1.1
82,475	-		Atu5081	0.70	+0.4
82,557	+		Atu5081	0.80	-0.1
82,565	-		Atu5081	0.80	+1.6
82,565	-		Atu5081	0.80	+3.1
82,575	+		Atu5081	0.82	+0.9
82,591	-		Atu5081	0.83	-0.5
82,651	+				+0.1
82,669	+				+0.6
82,669	+				-0.9
82,669	+				+0.1
82,677	-				+0.5
82,719	-				+2.0
82,733	-				+0.1
82,792	-				+0.2
82,801	-				+0.5
82,815	-				+1.5
82,874	-				+0.7
82,874	-				+0.0
82,927	-				+2.0
82,950	-		Atu5082	0.10	+0.3
83,021	-		Atu5082	0.15	-0.3
83,070	-		Atu5082	0.17	+2.1
83,116	+		Atu5082	0.20	+0.8
83,124	-		Atu5082	0.20	+2.1
83,239	-		Atu5082	0.27	+1.3
83,332	-		Atu5082	0.32	-0.3
83,334	+		Atu5082	0.32	-0.3
83,396	-		Atu5082	0.36	+1.2
83,396	-		Atu5082	0.36	+1.3
83,396	-		Atu5082	0.36	+0.8
83,396	-		Atu5082	0.36	+0.1
83,396	-		Atu5082	0.36	+0.3
83,396	-		Atu5082	0.36	-0.3
83,396	-		Atu5082	0.36	+2.1
83,418	-		Atu5082	0.37	-2.0
83,421	-		Atu5082	0.37	-0.9
83,423	+		Atu5082	0.37	+1.9
83,423	+		Atu5082	0.37	-0.2
83,426	-		Atu5082	0.37	-0.2
83,431	-		Atu5082	0.38	+1.1
83,431	-		Atu5082	0.38	-0.3
83,431	-		Atu5082	0.38	+2.0
83,431	-		Atu5082	0.38	+0.3
83,431	-		Atu5082	0.38	+0.3
83,431	-		Atu5082	0.38	+0.3
83,431	-		Atu5082	0.38	-1.7
83,431	-		Atu5082	0.38	+0.8
83,566	-		Atu5082	0.45	+0.4
83,580	+		Atu5082	0.46	+1.1
83,602	-		Atu5082	0.47	+0.8
83,602	-		Atu5082	0.47	+1.0
83,682	-		Atu5082	0.52	+0.2
83,695	+		Atu5082	0.53	+0.1
83,720	-		Atu5082	0.54	+1.3
83,729	+		Atu5082	0.55	+1.5
83,729	+		Atu5082	0.55	-2.6