Strain Fitness in Agrobacterium fabrum C58 around Atu5048

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
46,308	+				+2.1
46,323	-				+1.8
46,425	-				-0.0
46,444	+				+0.9
46,455	-				+2.2
46,455	-				+1.1
46,520	+				+0.6
46,529	+				-1.1
46,585	+				+0.2
46,633	+		Atu5046	0.22	-0.7
46,729	-		Atu5046	0.49	+2.1
46,764	+		Atu5046	0.59	-0.8
46,792	+		Atu5046	0.68	-0.9
46,800	-		Atu5046	0.70	+0.2
46,857	-		Atu5046	0.86	+0.3
46,945	+		Atu5047	0.17	+0.1
46,953	-		Atu5047	0.20	-0.0
46,965	-		Atu5047	0.25	+0.1
46,989	-		Atu5047	0.35	-0.0
46,993	-		Atu5047	0.37	-0.5
47,027	+		Atu5047	0.51	+0.7
47,059	+		Atu5047	0.65	-0.9
47,125	-				+0.1
47,157	-				+0.3
47,157	-				-0.3
47,170	-				-0.2
47,188	+				+1.1
47,240	+				+2.5
47,240	+				+0.1
47,245	+				+1.1
47,253	-				+0.1
47,253	-				+0.3
47,275	+				+1.7
47,283	-				+2.8
47,307	+		Atu5048	0.10	+1.7
47,307	+		Atu5048	0.10	-0.1
47,315	-		Atu5048	0.11	-0.2
47,315	-		Atu5048	0.11	+0.8
47,327	+		Atu5048	0.13	+1.0
47,327	+		Atu5048	0.13	+0.3
47,327	-		Atu5048	0.13	-0.3
47,335	-		Atu5048	0.14	+2.1
47,417	+		Atu5048	0.25	-0.4
47,446	+		Atu5048	0.28	+0.4
47,455	+		Atu5048	0.29	+2.6
47,459	-		Atu5048	0.30	-0.2
47,469	+		Atu5048	0.31	+1.8
47,477	-		Atu5048	0.32	-0.7
47,477	-		Atu5048	0.32	+1.3
47,491	+		Atu5048	0.34	-1.1
47,491	+		Atu5048	0.34	+0.4
47,494	-		Atu5048	0.34	+0.4
47,598	-		Atu5048	0.48	+0.3
47,600	+		Atu5048	0.48	+0.8
47,608	-		Atu5048	0.49	+1.8
47,622	-		Atu5048	0.51	-0.8
47,622	-		Atu5048	0.51	+0.4
47,622	-		Atu5048	0.51	-0.5
47,622	-		Atu5048	0.51	+2.1
47,652	+		Atu5048	0.55	+1.0
47,786	+		Atu5048	0.72	+1.1
47,925	-				+1.0
47,954	-				+0.2
47,973	-				+0.9
48,017	+				+0.0
48,038	+		Atu8099	0.14	-0.1
48,103	+		Atu8099	0.50	-1.0
48,126	+		Atu8099	0.63	+0.3
48,144	+		Atu8099	0.73	-0.0
48,188	-				+0.0
48,193	-				+0.1
48,198	-				-0.8
48,291	-				+0.1
48,385	+				+0.4
48,458	+				+1.3
48,461	-				+1.1
48,461	-				+0.9
48,463	-				+0.5
48,466	-				+1.1
48,466	-				+1.5
48,466	-				-1.6
48,466	-				+0.7
48,466	-				-0.7
48,506	-		Atu5049	0.13	-0.2
48,581	+		Atu5049	0.21	+0.7
48,581	+		Atu5049	0.21	+1.0
48,581	+		Atu5049	0.21	+2.1
48,581	+		Atu5049	0.21	+0.8
48,581	+		Atu5049	0.21	-0.2
48,589	-		Atu5049	0.22	+0.3
48,589	-		Atu5049	0.22	+0.6
48,589	-		Atu5049	0.22	+0.7
48,648	+		Atu5049	0.29	+1.0
48,656	-		Atu5049	0.30	-1.7
48,722	-		Atu5049	0.37	+0.5
48,733	+		Atu5049	0.38	-1.0
48,760	-		Atu5049	0.41	+0.6
48,795	+		Atu5049	0.45	-0.6
48,815	-		Atu5049	0.47	+1.1
48,830	-		Atu5049	0.49	-0.0
48,846	+		Atu5049	0.51	-0.0
48,863	+		Atu5049	0.53	+0.3
48,921	-		Atu5049	0.59	-0.8
48,937	+		Atu5049	0.61	-0.4
48,991	+		Atu5049	0.67	+1.1