Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3131 and Atu3132 are separated by 2 nucleotides Atu3132 and Atu3133 are separated by 4 nucleotides
Atu3131: Atu3131 - sugar ABC transporter ATPase, at 139,071 to 140,171
Atu3131
Atu3132: Atu3132 - sugar ABC transporter permease, at 140,174 to 141,058
Atu3132
Atu3133: Atu3133 - sugar ABC transporter permease, at 141,063 to 141,944
Atu3133
Position (kb) 140
141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 139.306 kb on - strand, within Atu3131 at 139.358 kb on + strand, within Atu3131 at 139.406 kb on - strand, within Atu3131 at 139.462 kb on + strand, within Atu3131 at 139.512 kb on - strand, within Atu3131 at 139.583 kb on - strand, within Atu3131 at 139.634 kb on + strand, within Atu3131 at 139.692 kb on - strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.762 kb on + strand, within Atu3131 at 139.997 kb on - strand, within Atu3131 at 140.017 kb on - strand, within Atu3131 at 140.052 kb on + strand, within Atu3131 at 140.067 kb on - strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.131 kb on + strand at 140.237 kb on + strand at 140.302 kb on - strand, within Atu3132 at 140.357 kb on - strand, within Atu3132 at 140.423 kb on - strand, within Atu3132 at 140.451 kb on + strand, within Atu3132 at 140.482 kb on - strand, within Atu3132 at 140.580 kb on + strand, within Atu3132 at 140.616 kb on - strand, within Atu3132 at 140.638 kb on - strand, within Atu3132 at 140.680 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.747 kb on + strand, within Atu3132 at 140.850 kb on - strand, within Atu3132 at 140.928 kb on + strand, within Atu3132 at 140.950 kb on + strand, within Atu3132 at 140.986 kb on - strand at 140.988 kb on + strand at 141.001 kb on + strand at 141.035 kb on + strand at 141.069 kb on - strand at 141.207 kb on + strand, within Atu3133 at 141.210 kb on - strand, within Atu3133 at 141.325 kb on + strand, within Atu3133 at 141.359 kb on + strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.366 kb on - strand, within Atu3133 at 141.367 kb on - strand, within Atu3133 at 141.386 kb on - strand, within Atu3133 at 141.473 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.727 kb on + strand, within Atu3133 at 141.735 kb on - strand, within Atu3133 at 141.827 kb on + strand, within Atu3133 at 141.835 kb on - strand, within Atu3133 at 141.848 kb on + strand, within Atu3133
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 139,306 - Atu3131 0.21 -0.2 139,358 + Atu3131 0.26 -0.3 139,406 - Atu3131 0.30 -0.0 139,462 + Atu3131 0.36 -0.1 139,512 - Atu3131 0.40 -0.1 139,583 - Atu3131 0.47 +0.1 139,634 + Atu3131 0.51 +0.2 139,692 - Atu3131 0.56 -0.2 139,734 + Atu3131 0.60 -0.2 139,734 + Atu3131 0.60 +0.1 139,762 + Atu3131 0.63 +0.5 139,997 - Atu3131 0.84 +0.6 140,017 - Atu3131 0.86 -0.4 140,052 + Atu3131 0.89 -0.3 140,067 - +0.0 140,116 + -0.8 140,116 + -0.0 140,116 + +0.4 140,131 + +1.1 140,237 + +0.2 140,302 - Atu3132 0.14 -0.6 140,357 - Atu3132 0.21 +2.6 140,423 - Atu3132 0.28 +1.4 140,451 + Atu3132 0.31 +0.3 140,482 - Atu3132 0.35 -0.3 140,580 + Atu3132 0.46 -0.2 140,616 - Atu3132 0.50 +0.2 140,638 - Atu3132 0.52 +0.2 140,680 - Atu3132 0.57 +0.9 140,734 - Atu3132 0.63 -0.2 140,734 - Atu3132 0.63 +0.1 140,747 + Atu3132 0.65 -0.0 140,850 - Atu3132 0.76 +1.0 140,928 + Atu3132 0.85 -0.8 140,950 + Atu3132 0.88 -2.8 140,986 - +0.7 140,988 + +0.6 141,001 + +0.8 141,035 + +0.0 141,069 - +0.3 141,207 + Atu3133 0.16 -0.2 141,210 - Atu3133 0.17 -0.3 141,325 + Atu3133 0.30 +0.3 141,359 + Atu3133 0.34 +0.2 141,366 - Atu3133 0.34 -0.2 141,366 - Atu3133 0.34 +0.3 141,367 - Atu3133 0.34 -0.2 141,386 - Atu3133 0.37 +0.0 141,473 + Atu3133 0.46 -0.6 141,727 + Atu3133 0.75 +0.7 141,727 + Atu3133 0.75 +0.2 141,735 - Atu3133 0.76 +0.5 141,827 + Atu3133 0.87 -1.0 141,835 - Atu3133 0.88 -0.1 141,848 + Atu3133 0.89 +0.2
Or see this region's nucleotide sequence