Strain Fitness in Agrobacterium fabrum C58 around Atu3066

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3065 and Atu3066 are separated by 4 nucleotidesAtu3066 and Atu3067 are separated by 24 nucleotidesAtu3067 and Atu3068 are separated by 9 nucleotides Atu3065: Atu3065 - sugar ABC transporter permease, at 67,724 to 68,728 Atu3065 Atu3066: Atu3066 - resiniferatoxin-binding, phosphotriesterase-like protein, at 68,733 to 69,800 Atu3066 Atu3067: Atu3067 - hypothetical protein, at 69,825 to 70,595 Atu3067 Atu3068: Atu3068 - ribokinase, at 70,605 to 71,501 Atu3068 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 67.861 kb on - strand, within Atu3065at 67.879 kb on - strand, within Atu3065at 67.909 kb on - strand, within Atu3065at 67.955 kb on - strand, within Atu3065at 67.989 kb on - strand, within Atu3065at 68.083 kb on - strand, within Atu3065at 68.083 kb on - strand, within Atu3065at 68.083 kb on - strand, within Atu3065at 68.085 kb on + strand, within Atu3065at 68.144 kb on - strand, within Atu3065at 68.151 kb on + strand, within Atu3065at 68.161 kb on + strand, within Atu3065at 68.169 kb on - strand, within Atu3065at 68.173 kb on + strand, within Atu3065at 68.173 kb on + strand, within Atu3065at 68.173 kb on + strand, within Atu3065at 68.177 kb on - strand, within Atu3065at 68.255 kb on - strand, within Atu3065at 68.391 kb on + strand, within Atu3065at 68.392 kb on + strand, within Atu3065at 68.434 kb on + strand, within Atu3065at 68.474 kb on + strand, within Atu3065at 68.495 kb on - strand, within Atu3065at 68.561 kb on + strand, within Atu3065at 68.561 kb on + strand, within Atu3065at 68.569 kb on - strand, within Atu3065at 68.569 kb on - strand, within Atu3065at 68.569 kb on - strand, within Atu3065at 68.569 kb on - strand, within Atu3065at 68.569 kb on - strand, within Atu3065at 68.571 kb on - strand, within Atu3065at 68.598 kb on + strand, within Atu3065at 68.633 kb on - strandat 68.639 kb on - strandat 68.683 kb on + strandat 68.730 kb on - strandat 68.745 kb on - strandat 68.755 kb on - strandat 68.755 kb on - strandat 68.769 kb on + strandat 68.774 kb on + strandat 68.785 kb on + strandat 68.805 kb on + strandat 68.810 kb on + strandat 68.878 kb on - strand, within Atu3066at 68.878 kb on - strand, within Atu3066at 68.943 kb on + strand, within Atu3066at 68.968 kb on - strand, within Atu3066at 69.116 kb on + strand, within Atu3066at 69.129 kb on + strand, within Atu3066at 69.315 kb on + strand, within Atu3066at 69.315 kb on + strand, within Atu3066at 69.332 kb on - strand, within Atu3066at 69.332 kb on - strand, within Atu3066at 69.339 kb on - strand, within Atu3066at 69.344 kb on - strand, within Atu3066at 69.367 kb on + strand, within Atu3066at 69.367 kb on + strand, within Atu3066at 69.417 kb on + strand, within Atu3066at 69.422 kb on + strand, within Atu3066at 69.425 kb on - strand, within Atu3066at 69.430 kb on - strand, within Atu3066at 69.466 kb on + strand, within Atu3066at 69.483 kb on + strand, within Atu3066at 69.552 kb on + strand, within Atu3066at 69.599 kb on + strand, within Atu3066at 69.878 kb on + strandat 69.910 kb on + strand, within Atu3067at 69.910 kb on + strand, within Atu3067at 69.918 kb on - strand, within Atu3067at 69.918 kb on - strand, within Atu3067at 69.935 kb on + strand, within Atu3067at 69.945 kb on + strand, within Atu3067at 70.012 kb on + strand, within Atu3067at 70.108 kb on - strand, within Atu3067at 70.130 kb on + strand, within Atu3067at 70.163 kb on + strand, within Atu3067at 70.178 kb on + strand, within Atu3067at 70.194 kb on - strand, within Atu3067at 70.366 kb on + strand, within Atu3067at 70.369 kb on - strand, within Atu3067at 70.467 kb on + strand, within Atu3067at 70.603 kb on + strandat 70.603 kb on + strandat 70.603 kb on + strandat 70.626 kb on + strandat 70.637 kb on - strandat 70.655 kb on - strandat 70.744 kb on - strand, within Atu3068at 70.786 kb on + strand, within Atu3068

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
67,861 - Atu3065 0.14 -0.9
67,879 - Atu3065 0.15 -0.1
67,909 - Atu3065 0.18 +0.1
67,955 - Atu3065 0.23 -0.1
67,989 - Atu3065 0.26 -0.7
68,083 - Atu3065 0.36 -0.6
68,083 - Atu3065 0.36 -0.7
68,083 - Atu3065 0.36 -0.2
68,085 + Atu3065 0.36 -1.0
68,144 - Atu3065 0.42 +0.1
68,151 + Atu3065 0.42 -0.2
68,161 + Atu3065 0.43 -0.3
68,169 - Atu3065 0.44 +0.0
68,173 + Atu3065 0.45 -0.2
68,173 + Atu3065 0.45 -0.1
68,173 + Atu3065 0.45 -0.4
68,177 - Atu3065 0.45 -0.0
68,255 - Atu3065 0.53 -1.3
68,391 + Atu3065 0.66 -0.2
68,392 + Atu3065 0.66 -1.0
68,434 + Atu3065 0.71 +0.0
68,474 + Atu3065 0.75 +0.5
68,495 - Atu3065 0.77 -0.2
68,561 + Atu3065 0.83 -0.3
68,561 + Atu3065 0.83 -0.7
68,569 - Atu3065 0.84 -1.7
68,569 - Atu3065 0.84 -0.1
68,569 - Atu3065 0.84 -0.4
68,569 - Atu3065 0.84 +0.3
68,569 - Atu3065 0.84 +0.1
68,571 - Atu3065 0.84 -0.3
68,598 + Atu3065 0.87 -0.1
68,633 - -0.3
68,639 - -1.4
68,683 + +0.8
68,730 - +1.0
68,745 - -0.4
68,755 - -1.0
68,755 - -0.1
68,769 + +1.2
68,774 + +0.3
68,785 + +0.2
68,805 + +1.6
68,810 + -0.2
68,878 - Atu3066 0.14 -1.0
68,878 - Atu3066 0.14 -0.8
68,943 + Atu3066 0.20 -0.0
68,968 - Atu3066 0.22 +0.4
69,116 + Atu3066 0.36 -0.7
69,129 + Atu3066 0.37 -0.4
69,315 + Atu3066 0.54 -0.7
69,315 + Atu3066 0.54 -0.3
69,332 - Atu3066 0.56 -0.1
69,332 - Atu3066 0.56 -1.2
69,339 - Atu3066 0.57 +0.2
69,344 - Atu3066 0.57 -0.2
69,367 + Atu3066 0.59 -0.7
69,367 + Atu3066 0.59 -0.0
69,417 + Atu3066 0.64 -0.4
69,422 + Atu3066 0.65 +0.1
69,425 - Atu3066 0.65 +0.5
69,430 - Atu3066 0.65 -0.3
69,466 + Atu3066 0.69 -0.3
69,483 + Atu3066 0.70 +0.3
69,552 + Atu3066 0.77 -1.0
69,599 + Atu3066 0.81 -0.3
69,878 + +0.2
69,910 + Atu3067 0.11 +0.3
69,910 + Atu3067 0.11 -0.1
69,918 - Atu3067 0.12 -0.6
69,918 - Atu3067 0.12 -0.4
69,935 + Atu3067 0.14 +0.0
69,945 + Atu3067 0.16 -0.1
70,012 + Atu3067 0.24 +1.0
70,108 - Atu3067 0.37 -1.5
70,130 + Atu3067 0.40 +0.0
70,163 + Atu3067 0.44 -0.7
70,178 + Atu3067 0.46 -0.4
70,194 - Atu3067 0.48 -0.4
70,366 + Atu3067 0.70 -1.9
70,369 - Atu3067 0.71 +1.0
70,467 + Atu3067 0.83 -0.3
70,603 + +0.5
70,603 + +0.1
70,603 + -0.9
70,626 + +0.1
70,637 - -0.1
70,655 - +0.4
70,744 - Atu3068 0.15 +0.2
70,786 + Atu3068 0.20 -0.4

Or see this region's nucleotide sequence