Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0857 and Atu0858 overlap by 47 nucleotides Atu0858 and Atu0859 overlap by 4 nucleotides Atu0859 and Atu0860 are separated by 57 nucleotides
Atu0857: Atu0857 - oxidoreductase, at 856,749 to 857,471
Atu0857
Atu0858: Atu0858 - putative carboxymuconolactone decarboxylase, at 857,425 to 857,958
Atu0858
Atu0859: Atu0859 - hypothetical protein, at 857,955 to 858,305
Atu0859
Atu0860: Atu0860 - hypothetical protein, at 858,363 to 859,925
Atu0860
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.981 kb on + strand, within Atu0857 at 856.988 kb on - strand, within Atu0857 at 857.063 kb on + strand, within Atu0857 at 857.071 kb on + strand, within Atu0857 at 857.084 kb on + strand, within Atu0857 at 857.140 kb on + strand, within Atu0857 at 857.148 kb on - strand, within Atu0857 at 857.183 kb on - strand, within Atu0857 at 857.278 kb on + strand, within Atu0857 at 857.349 kb on + strand, within Atu0857 at 857.351 kb on - strand, within Atu0857 at 857.378 kb on - strand, within Atu0857 at 857.536 kb on - strand, within Atu0858 at 857.554 kb on - strand, within Atu0858 at 857.564 kb on - strand, within Atu0858 at 857.649 kb on - strand, within Atu0858 at 857.676 kb on + strand, within Atu0858 at 857.677 kb on + strand, within Atu0858 at 857.684 kb on - strand, within Atu0858 at 857.684 kb on - strand, within Atu0858 at 857.691 kb on - strand, within Atu0858 at 857.702 kb on - strand, within Atu0858 at 857.718 kb on - strand, within Atu0858 at 857.757 kb on + strand, within Atu0858 at 857.792 kb on - strand, within Atu0858 at 857.878 kb on - strand, within Atu0858 at 857.878 kb on - strand, within Atu0858 at 858.058 kb on - strand, within Atu0859 at 858.108 kb on + strand, within Atu0859 at 858.108 kb on + strand, within Atu0859 at 858.177 kb on + strand, within Atu0859 at 858.187 kb on + strand, within Atu0859 at 858.340 kb on - strand at 858.368 kb on + strand at 858.376 kb on - strand at 858.422 kb on - strand at 858.422 kb on - strand at 858.526 kb on - strand, within Atu0860 at 858.537 kb on - strand, within Atu0860 at 858.755 kb on - strand, within Atu0860 at 858.806 kb on + strand, within Atu0860 at 858.808 kb on + strand, within Atu0860 at 858.819 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.920 kb on + strand, within Atu0860 at 858.928 kb on - strand, within Atu0860 at 858.928 kb on - strand, within Atu0860 at 858.928 kb on - strand, within Atu0860 at 858.996 kb on - strand, within Atu0860 at 859.029 kb on - strand, within Atu0860 at 859.089 kb on - strand, within Atu0860 at 859.089 kb on - strand, within Atu0860 at 859.202 kb on + strand, within Atu0860 at 859.264 kb on - strand, within Atu0860 at 859.270 kb on + strand, within Atu0860
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 856,981 + Atu0857 0.32 -0.1 856,988 - Atu0857 0.33 +0.3 857,063 + Atu0857 0.43 -0.4 857,071 + Atu0857 0.45 +0.6 857,084 + Atu0857 0.46 -0.5 857,140 + Atu0857 0.54 -0.1 857,148 - Atu0857 0.55 -1.8 857,183 - Atu0857 0.60 +0.3 857,278 + Atu0857 0.73 +0.0 857,349 + Atu0857 0.83 -0.1 857,351 - Atu0857 0.83 +0.3 857,378 - Atu0857 0.87 +0.4 857,536 - Atu0858 0.21 +0.0 857,554 - Atu0858 0.24 +0.1 857,564 - Atu0858 0.26 +0.1 857,649 - Atu0858 0.42 +0.1 857,676 + Atu0858 0.47 +0.6 857,677 + Atu0858 0.47 +0.1 857,684 - Atu0858 0.49 -0.2 857,684 - Atu0858 0.49 +0.7 857,691 - Atu0858 0.50 +1.7 857,702 - Atu0858 0.52 +0.5 857,718 - Atu0858 0.55 -0.0 857,757 + Atu0858 0.62 -0.4 857,792 - Atu0858 0.69 -0.1 857,878 - Atu0858 0.85 -0.6 857,878 - Atu0858 0.85 +0.4 858,058 - Atu0859 0.29 -0.4 858,108 + Atu0859 0.44 +0.7 858,108 + Atu0859 0.44 +0.1 858,177 + Atu0859 0.63 -0.4 858,187 + Atu0859 0.66 -1.5 858,340 - +0.1 858,368 + +1.2 858,376 - +0.1 858,422 - +0.5 858,422 - +0.1 858,526 - Atu0860 0.10 +0.6 858,537 - Atu0860 0.11 +2.3 858,755 - Atu0860 0.25 +0.2 858,806 + Atu0860 0.28 +0.5 858,808 + Atu0860 0.28 -0.9 858,819 + Atu0860 0.29 +0.3 858,920 + Atu0860 0.36 +0.5 858,920 + Atu0860 0.36 -0.5 858,920 + Atu0860 0.36 -0.6 858,920 + Atu0860 0.36 -0.4 858,920 + Atu0860 0.36 +0.0 858,928 - Atu0860 0.36 -0.3 858,928 - Atu0860 0.36 +1.7 858,928 - Atu0860 0.36 +0.1 858,996 - Atu0860 0.40 -0.1 859,029 - Atu0860 0.43 +0.5 859,089 - Atu0860 0.46 +0.7 859,089 - Atu0860 0.46 -0.5 859,202 + Atu0860 0.54 -0.3 859,264 - Atu0860 0.58 +0.9 859,270 + Atu0860 0.58 -0.8
Or see this region's nucleotide sequence