Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0667 and Atu0668 overlap by 4 nucleotides Atu0668 and Atu0669 are separated by 259 nucleotides
Atu0667: Atu0667 - glycolate oxidase iron-sulfur subunit, at 663,091 to 664,392
Atu0667
Atu0668: Atu0668 - hypothetical protein, at 664,389 to 665,048
Atu0668
Atu0669: Atu0669 - hypothetical protein, at 665,308 to 666,084
Atu0669
Position (kb) 664
665
666 Strain fitness (log2 ratio) -2
-1
0
1 at 663.485 kb on - strand, within Atu0667 at 663.513 kb on + strand, within Atu0667 at 663.526 kb on - strand, within Atu0667 at 663.685 kb on + strand, within Atu0667 at 663.693 kb on - strand, within Atu0667 at 663.743 kb on + strand, within Atu0667 at 663.761 kb on - strand, within Atu0667 at 663.768 kb on - strand, within Atu0667 at 663.786 kb on + strand, within Atu0667 at 663.892 kb on + strand, within Atu0667 at 663.990 kb on + strand, within Atu0667 at 663.998 kb on - strand, within Atu0667 at 663.998 kb on - strand, within Atu0667 at 664.013 kb on + strand, within Atu0667 at 664.013 kb on + strand, within Atu0667 at 664.025 kb on + strand, within Atu0667 at 664.045 kb on - strand, within Atu0667 at 664.078 kb on - strand, within Atu0667 at 664.092 kb on - strand, within Atu0667 at 664.100 kb on - strand, within Atu0667 at 664.154 kb on + strand, within Atu0667 at 664.157 kb on + strand, within Atu0667 at 664.183 kb on + strand, within Atu0667 at 664.225 kb on - strand, within Atu0667 at 664.299 kb on + strand at 664.299 kb on + strand at 664.299 kb on + strand at 664.307 kb on - strand at 664.322 kb on - strand at 664.342 kb on + strand at 664.489 kb on + strand, within Atu0668 at 664.499 kb on - strand, within Atu0668 at 664.507 kb on - strand, within Atu0668 at 664.537 kb on + strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.654 kb on - strand, within Atu0668 at 664.715 kb on - strand, within Atu0668 at 664.768 kb on + strand, within Atu0668 at 664.784 kb on + strand, within Atu0668 at 664.860 kb on - strand, within Atu0668 at 665.010 kb on + strand at 665.146 kb on + strand at 665.177 kb on + strand at 665.255 kb on + strand at 665.324 kb on - strand at 665.416 kb on + strand, within Atu0669 at 665.416 kb on + strand, within Atu0669 at 665.416 kb on + strand, within Atu0669 at 665.429 kb on - strand, within Atu0669 at 665.429 kb on - strand, within Atu0669 at 665.448 kb on - strand, within Atu0669 at 665.482 kb on - strand, within Atu0669 at 665.507 kb on + strand, within Atu0669 at 665.540 kb on - strand, within Atu0669 at 665.560 kb on + strand, within Atu0669 at 665.568 kb on - strand, within Atu0669 at 665.600 kb on + strand, within Atu0669 at 665.600 kb on - strand, within Atu0669 at 665.608 kb on - strand, within Atu0669 at 665.644 kb on + strand, within Atu0669 at 665.901 kb on - strand, within Atu0669
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 663,485 - Atu0667 0.30 +0.1 663,513 + Atu0667 0.32 +0.2 663,526 - Atu0667 0.33 -0.5 663,685 + Atu0667 0.46 -0.1 663,693 - Atu0667 0.46 -0.1 663,743 + Atu0667 0.50 -0.9 663,761 - Atu0667 0.51 +0.1 663,768 - Atu0667 0.52 -0.2 663,786 + Atu0667 0.53 -0.1 663,892 + Atu0667 0.62 -0.3 663,990 + Atu0667 0.69 -0.5 663,998 - Atu0667 0.70 +0.3 663,998 - Atu0667 0.70 +0.0 664,013 + Atu0667 0.71 -0.2 664,013 + Atu0667 0.71 -0.4 664,025 + Atu0667 0.72 +0.1 664,045 - Atu0667 0.73 -0.2 664,078 - Atu0667 0.76 -0.1 664,092 - Atu0667 0.77 +0.5 664,100 - Atu0667 0.77 +1.0 664,154 + Atu0667 0.82 -0.7 664,157 + Atu0667 0.82 -0.3 664,183 + Atu0667 0.84 -0.0 664,225 - Atu0667 0.87 -0.2 664,299 + -0.4 664,299 + +0.5 664,299 + -0.5 664,307 - +0.3 664,322 - -0.9 664,342 + -0.4 664,489 + Atu0668 0.15 -0.2 664,499 - Atu0668 0.17 +0.0 664,507 - Atu0668 0.18 -0.2 664,537 + Atu0668 0.22 -0.2 664,654 - Atu0668 0.40 -0.4 664,654 - Atu0668 0.40 +0.2 664,715 - Atu0668 0.49 -0.0 664,768 + Atu0668 0.57 -1.2 664,784 + Atu0668 0.60 -0.9 664,860 - Atu0668 0.71 +0.2 665,010 + +0.1 665,146 + -0.5 665,177 + +0.1 665,255 + +1.1 665,324 - +0.3 665,416 + Atu0669 0.14 +0.5 665,416 + Atu0669 0.14 -1.5 665,416 + Atu0669 0.14 -0.2 665,429 - Atu0669 0.16 +0.2 665,429 - Atu0669 0.16 +1.0 665,448 - Atu0669 0.18 -1.8 665,482 - Atu0669 0.22 -0.5 665,507 + Atu0669 0.26 -0.3 665,540 - Atu0669 0.30 +0.0 665,560 + Atu0669 0.32 +0.1 665,568 - Atu0669 0.33 +0.4 665,600 + Atu0669 0.38 +0.8 665,600 - Atu0669 0.38 -0.1 665,608 - Atu0669 0.39 +0.5 665,644 + Atu0669 0.43 -0.0 665,901 - Atu0669 0.76 +1.0
Or see this region's nucleotide sequence