Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0402 and Atu0403 overlap by 4 nucleotides Atu0403 and Atu0404 are separated by 55 nucleotides
Atu0402: Atu0402 - hypothetical protein, at 396,686 to 397,651
Atu0402
Atu0403: Atu0403 - hypothetical protein, at 397,648 to 398,376
Atu0403
Atu0404: Atu0404 - glucose-6-phosphate isomerase, at 398,432 to 400,057
Atu0404
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.700 kb on + strand at 396.708 kb on - strand at 396.756 kb on + strand at 396.845 kb on - strand, within Atu0402 at 396.866 kb on - strand, within Atu0402 at 396.946 kb on + strand, within Atu0402 at 397.027 kb on + strand, within Atu0402 at 397.071 kb on + strand, within Atu0402 at 397.079 kb on - strand, within Atu0402 at 397.194 kb on + strand, within Atu0402 at 397.202 kb on - strand, within Atu0402 at 397.214 kb on - strand, within Atu0402 at 397.370 kb on + strand, within Atu0402 at 397.370 kb on + strand, within Atu0402 at 397.378 kb on - strand, within Atu0402 at 397.378 kb on - strand, within Atu0402 at 397.410 kb on - strand, within Atu0402 at 397.446 kb on + strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.561 kb on - strand at 397.585 kb on + strand at 397.593 kb on - strand at 397.619 kb on + strand at 397.676 kb on + strand at 397.694 kb on + strand at 397.712 kb on - strand at 397.732 kb on + strand, within Atu0403 at 397.830 kb on + strand, within Atu0403 at 397.838 kb on - strand, within Atu0403 at 397.979 kb on + strand, within Atu0403 at 397.992 kb on - strand, within Atu0403 at 397.992 kb on - strand, within Atu0403 at 397.997 kb on - strand, within Atu0403 at 398.036 kb on + strand, within Atu0403 at 398.044 kb on + strand, within Atu0403 at 398.083 kb on + strand, within Atu0403 at 398.093 kb on + strand, within Atu0403 at 398.178 kb on + strand, within Atu0403 at 398.186 kb on - strand, within Atu0403 at 398.221 kb on + strand, within Atu0403 at 398.221 kb on + strand, within Atu0403 at 398.229 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.274 kb on - strand, within Atu0403 at 398.349 kb on + strand at 398.454 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 396,700 + +0.9 396,708 - +0.8 396,756 + +1.0 396,845 - Atu0402 0.16 +1.1 396,866 - Atu0402 0.19 -0.1 396,946 + Atu0402 0.27 +1.0 397,027 + Atu0402 0.35 +0.7 397,071 + Atu0402 0.40 -0.1 397,079 - Atu0402 0.41 +0.2 397,194 + Atu0402 0.53 +1.0 397,202 - Atu0402 0.53 +1.8 397,214 - Atu0402 0.55 +0.7 397,370 + Atu0402 0.71 -0.0 397,370 + Atu0402 0.71 +0.4 397,378 - Atu0402 0.72 +0.2 397,378 - Atu0402 0.72 -0.5 397,410 - Atu0402 0.75 -0.6 397,446 + Atu0402 0.79 +0.2 397,527 - Atu0402 0.87 +0.5 397,527 - Atu0402 0.87 +1.0 397,527 - Atu0402 0.87 +0.6 397,527 - Atu0402 0.87 +0.9 397,561 - -0.0 397,585 + +0.1 397,593 - -1.1 397,619 + +0.2 397,676 + +0.3 397,694 + -2.4 397,712 - +1.3 397,732 + Atu0403 0.12 -0.2 397,830 + Atu0403 0.25 -0.5 397,838 - Atu0403 0.26 +0.1 397,979 + Atu0403 0.45 +0.0 397,992 - Atu0403 0.47 +0.2 397,992 - Atu0403 0.47 -1.2 397,997 - Atu0403 0.48 -0.4 398,036 + Atu0403 0.53 -0.0 398,044 + Atu0403 0.54 +0.2 398,083 + Atu0403 0.60 -1.4 398,093 + Atu0403 0.61 -0.4 398,178 + Atu0403 0.73 +0.0 398,186 - Atu0403 0.74 -1.0 398,221 + Atu0403 0.79 +0.4 398,221 + Atu0403 0.79 +0.5 398,229 - Atu0403 0.80 +0.3 398,274 - Atu0403 0.86 -0.8 398,274 - Atu0403 0.86 +0.8 398,274 - Atu0403 0.86 +0.2 398,274 - Atu0403 0.86 -0.4 398,349 + +0.3 398,454 + -0.3
Or see this region's nucleotide sequence