Strain Fitness in Agrobacterium fabrum C58 around Atu0400

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
394,009	-		Atu0399	0.35	+3.1
394,116	+		Atu0399	0.45	+1.1
394,116	+		Atu0399	0.45	+0.2
394,124	-		Atu0399	0.46	-0.7
394,398	+		Atu0399	0.72	-1.4
394,449	+		Atu0399	0.77	+0.0
394,468	+		Atu0399	0.79	-0.2
394,476	-		Atu0399	0.80	-0.2
394,516	-		Atu0399	0.84	+0.6
394,557	-		Atu0399	0.88	-0.1
394,580	+		Atu0399	0.90	+0.2
394,580	+		Atu0399	0.90	-0.5
394,588	-				+1.1
394,740	-				-0.8
394,740	-				+0.2
394,940	-		Atu0400	0.15	-2.0
394,940	-		Atu0400	0.15	-0.2
394,940	-		Atu0400	0.15	+0.2
395,017	-		Atu0400	0.26	-0.5
395,118	-		Atu0400	0.40	+0.8
395,163	+		Atu0400	0.47	-1.1
395,375	-		Atu0400	0.77	-0.5
395,482	+				-0.5
395,505	-				+0.3
395,551	+				+0.8
395,625	-				-0.2
395,736	-		Atu0401	0.11	+0.1
395,863	+		Atu0401	0.25	-0.8
396,011	-		Atu0401	0.41	-0.1
396,028	+		Atu0401	0.42	+0.2
396,055	-		Atu0401	0.45	+0.4
396,356	-		Atu0401	0.78	-0.6
396,513	+				-1.2
396,521	-				-1.5