Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6044 and Atu6045 are separated by 214 nucleotides Atu6045 and Atu6046 are separated by 8 nucleotides
Atu6044: Atu6044 - replication protein, at 53,578 to 54,690
Atu6044
Atu6045: Atu6045 - replication protein C, at 54,905 to 56,224
Atu6045
Atu6046: Atu6046 - DNA invertase, at 56,233 to 57,345
Atu6046
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -1
0
1 at 56.091 kb on + strand, within Atu6045 at 56.099 kb on - strand at 56.142 kb on + strand at 56.142 kb on + strand at 56.152 kb on - strand at 56.152 kb on - strand at 56.160 kb on - strand at 56.167 kb on - strand at 56.337 kb on + strand at 56.354 kb on + strand, within Atu6046 at 56.354 kb on + strand, within Atu6046 at 56.362 kb on - strand, within Atu6046 at 56.403 kb on + strand, within Atu6046 at 56.415 kb on + strand, within Atu6046 at 56.515 kb on + strand, within Atu6046 at 56.548 kb on - strand, within Atu6046 at 56.558 kb on - strand, within Atu6046 at 56.569 kb on + strand, within Atu6046 at 56.606 kb on + strand, within Atu6046 at 56.629 kb on + strand, within Atu6046 at 56.631 kb on + strand, within Atu6046 at 56.669 kb on + strand, within Atu6046 at 56.669 kb on - strand, within Atu6046 at 56.791 kb on - strand, within Atu6046 at 56.888 kb on + strand, within Atu6046 at 56.910 kb on + strand, within Atu6046 at 56.911 kb on - strand, within Atu6046 at 56.978 kb on + strand, within Atu6046 at 57.199 kb on - strand, within Atu6046
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 56,091 + Atu6045 0.90 -0.7 56,099 - +0.7 56,142 + -0.4 56,142 + +0.9 56,152 - +0.2 56,152 - +0.6 56,160 - -1.3 56,167 - -1.7 56,337 + +1.1 56,354 + Atu6046 0.11 -0.2 56,354 + Atu6046 0.11 -0.4 56,362 - Atu6046 0.12 +0.1 56,403 + Atu6046 0.15 -0.3 56,415 + Atu6046 0.16 -0.5 56,515 + Atu6046 0.25 +0.5 56,548 - Atu6046 0.28 -0.5 56,558 - Atu6046 0.29 +0.6 56,569 + Atu6046 0.30 -0.4 56,606 + Atu6046 0.34 -0.5 56,629 + Atu6046 0.36 -0.4 56,631 + Atu6046 0.36 -0.1 56,669 + Atu6046 0.39 +0.2 56,669 - Atu6046 0.39 +0.4 56,791 - Atu6046 0.50 +0.2 56,888 + Atu6046 0.59 +0.5 56,910 + Atu6046 0.61 -1.2 56,911 - Atu6046 0.61 +0.3 56,978 + Atu6046 0.67 +0.3 57,199 - Atu6046 0.87 +1.1
Or see this region's nucleotide sequence