Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0539 and Atu0540 are separated by 102 nucleotides Atu0540 and Atu0541 are separated by 155 nucleotides Atu0541 and Atu0542 are separated by 188 nucleotides
Atu0539: Atu0539 - UDP-N-acetylglucosamine, at 529,856 to 531,148
Atu0539
Atu0540: Atu0540 - hypothetical protein, at 531,251 to 531,517
Atu0540
Atu0541: Atu0541 - tRNA-Thr, at 531,673 to 531,747
Atu0541
Atu0542: Atu0542 - flagellin, at 531,936 to 532,877
Atu0542
Position (kb) 531
532 Strain fitness (log2 ratio) -1
0
1 at 531.309 kb on - strand, within Atu0540 at 531.334 kb on - strand, within Atu0540 at 531.425 kb on - strand, within Atu0540 at 531.496 kb on + strand at 531.500 kb on + strand at 531.830 kb on - strand at 531.895 kb on + strand at 531.904 kb on + strand at 532.024 kb on + strand at 532.024 kb on + strand at 532.032 kb on - strand, within Atu0542 at 532.032 kb on - strand, within Atu0542 at 532.032 kb on - strand, within Atu0542 at 532.052 kb on + strand, within Atu0542 at 532.071 kb on + strand, within Atu0542 at 532.293 kb on - strand, within Atu0542 at 532.308 kb on - strand, within Atu0542 at 532.416 kb on + strand, within Atu0542 at 532.464 kb on - strand, within Atu0542 at 532.511 kb on - strand, within Atu0542 at 532.516 kb on - strand, within Atu0542
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 531,309 - Atu0540 0.22 -0.2 531,334 - Atu0540 0.31 -0.9 531,425 - Atu0540 0.65 -0.4 531,496 + +0.5 531,500 + +0.1 531,830 - -1.0 531,895 + +0.3 531,904 + -0.1 532,024 + -0.1 532,024 + +0.0 532,032 - Atu0542 0.10 -0.6 532,032 - Atu0542 0.10 -0.1 532,032 - Atu0542 0.10 -0.6 532,052 + Atu0542 0.12 -0.1 532,071 + Atu0542 0.14 -0.1 532,293 - Atu0542 0.38 -0.2 532,308 - Atu0542 0.39 +0.1 532,416 + Atu0542 0.51 -0.1 532,464 - Atu0542 0.56 +0.3 532,511 - Atu0542 0.61 -0.0 532,516 - Atu0542 0.62 -0.6
Or see this region's nucleotide sequence