Strain Fitness in Escherichia coli BW25113 around b1695

Experiment: LB Aerobic with Benzethonium chloride 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiF and b1695 are separated by 13 nucleotidesb1695 and ydiP are separated by 42 nucleotides b1694: ydiF - fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit (NCBI), at 1,773,611 to 1,775,206 ydiF b1695: b1695 - putative oxidoreductase (VIMSS), at 1,775,220 to 1,776,371 b1695 b1696: ydiP - predicted DNA-binding transcriptional regulator (NCBI), at 1,776,414 to 1,777,325 ydiP Position (kb) 1775 1776 1777Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1774.239 kb on - strand, within ydiFat 1774.251 kb on - strand, within ydiFat 1774.261 kb on - strand, within ydiFat 1774.368 kb on + strand, within ydiFat 1774.392 kb on - strand, within ydiFat 1774.449 kb on + strand, within ydiFat 1774.459 kb on + strand, within ydiFat 1774.551 kb on + strand, within ydiFat 1774.551 kb on + strand, within ydiFat 1774.552 kb on - strand, within ydiFat 1774.559 kb on - strand, within ydiFat 1774.559 kb on - strand, within ydiFat 1774.571 kb on + strand, within ydiFat 1774.603 kb on + strand, within ydiFat 1774.660 kb on + strand, within ydiFat 1774.660 kb on + strand, within ydiFat 1774.759 kb on + strand, within ydiFat 1774.759 kb on + strand, within ydiFat 1774.762 kb on + strand, within ydiFat 1774.762 kb on + strand, within ydiFat 1774.762 kb on + strand, within ydiFat 1775.024 kb on + strand, within ydiFat 1775.186 kb on - strandat 1775.201 kb on + strandat 1775.325 kb on - strandat 1775.334 kb on - strandat 1775.404 kb on - strand, within b1695at 1775.404 kb on - strand, within b1695at 1775.427 kb on - strand, within b1695at 1775.581 kb on - strand, within b1695at 1775.657 kb on + strand, within b1695at 1775.858 kb on - strand, within b1695at 1776.002 kb on + strand, within b1695at 1776.174 kb on + strand, within b1695at 1776.176 kb on + strand, within b1695at 1776.239 kb on + strand, within b1695at 1776.293 kb on + strandat 1776.326 kb on + strandat 1776.356 kb on + strandat 1776.356 kb on + strandat 1776.411 kb on + strandat 1776.485 kb on + strandat 1776.538 kb on - strand, within ydiPat 1776.538 kb on - strand, within ydiPat 1776.867 kb on - strand, within ydiPat 1777.038 kb on - strand, within ydiPat 1777.038 kb on - strand, within ydiPat 1777.038 kb on - strand, within ydiPat 1777.216 kb on + strand, within ydiPat 1777.304 kb on + strandat 1777.341 kb on - strandat 1777.347 kb on - strandat 1777.355 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Benzethonium chloride 0.000015625 mM
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1,774,239 - ydiF b1694 0.39 -0.6
1,774,251 - ydiF b1694 0.40 -0.1
1,774,261 - ydiF b1694 0.41 -2.4
1,774,368 + ydiF b1694 0.47 -0.6
1,774,392 - ydiF b1694 0.49 -0.6
1,774,449 + ydiF b1694 0.53 -1.0
1,774,459 + ydiF b1694 0.53 -0.0
1,774,551 + ydiF b1694 0.59 -0.2
1,774,551 + ydiF b1694 0.59 +0.4
1,774,552 - ydiF b1694 0.59 +0.4
1,774,559 - ydiF b1694 0.59 +0.4
1,774,559 - ydiF b1694 0.59 +0.4
1,774,571 + ydiF b1694 0.60 -0.3
1,774,603 + ydiF b1694 0.62 +2.0
1,774,660 + ydiF b1694 0.66 +1.4
1,774,660 + ydiF b1694 0.66 +1.0
1,774,759 + ydiF b1694 0.72 +1.6
1,774,759 + ydiF b1694 0.72 +0.4
1,774,762 + ydiF b1694 0.72 -0.3
1,774,762 + ydiF b1694 0.72 -2.9
1,774,762 + ydiF b1694 0.72 +0.1
1,775,024 + ydiF b1694 0.89 +0.4
1,775,186 - +0.4
1,775,201 + +0.4
1,775,325 - +0.4
1,775,334 - +0.4
1,775,404 - b1695 b1695 0.16 +0.4
1,775,404 - b1695 b1695 0.16 +0.4
1,775,427 - b1695 b1695 0.18 +0.4
1,775,581 - b1695 b1695 0.31 +0.4
1,775,657 + b1695 b1695 0.38 +0.7
1,775,858 - b1695 b1695 0.55 +0.2
1,776,002 + b1695 b1695 0.68 +0.3
1,776,174 + b1695 b1695 0.83 +0.1
1,776,176 + b1695 b1695 0.83 +0.4
1,776,239 + b1695 b1695 0.88 +0.9
1,776,293 + -0.0
1,776,326 + -0.8
1,776,356 + +0.6
1,776,356 + -0.9
1,776,411 + +0.4
1,776,485 + +0.4
1,776,538 - ydiP b1696 0.14 +0.4
1,776,538 - ydiP b1696 0.14 -0.6
1,776,867 - ydiP b1696 0.50 +0.4
1,777,038 - ydiP b1696 0.68 -1.4
1,777,038 - ydiP b1696 0.68 -0.1
1,777,038 - ydiP b1696 0.68 -1.1
1,777,216 + ydiP b1696 0.88 +0.4
1,777,304 + +0.4
1,777,341 - -1.4
1,777,347 - -0.1
1,777,355 + +0.4

Or see this region's nucleotide sequence