Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4286 and PP_4287 overlap by 1 nucleotides PP_4287 and PP_4288 are separated by 49 nucleotides PP_4288 and PP_4289 are separated by 44 nucleotides
PP_4286: PP_4286 - allantoinase, at 4,877,352 to 4,878,278
_4286
PP_4287: PP_4287 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 4,878,278 to 4,878,793
_4287
PP_4288: PP_4288 - ureidoglycolate lyase, at 4,878,843 to 4,879,346
_4288
PP_4289: PP_4289 - conserved membrane protein of unknown function, at 4,879,391 to 4,880,731
_4289
Position (kb) 4878
4879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4877.300 kb on - strand at 4877.328 kb on + strand at 4877.455 kb on - strand, within PP_4286 at 4877.574 kb on + strand, within PP_4286 at 4877.574 kb on + strand, within PP_4286 at 4877.574 kb on + strand, within PP_4286 at 4877.599 kb on + strand, within PP_4286 at 4877.600 kb on - strand, within PP_4286 at 4877.842 kb on - strand, within PP_4286 at 4877.902 kb on - strand, within PP_4286 at 4877.916 kb on + strand, within PP_4286 at 4877.916 kb on + strand, within PP_4286 at 4877.917 kb on - strand, within PP_4286 at 4877.917 kb on - strand, within PP_4286 at 4877.982 kb on + strand, within PP_4286 at 4877.982 kb on + strand, within PP_4286 at 4877.982 kb on + strand, within PP_4286 at 4877.982 kb on + strand, within PP_4286 at 4878.019 kb on + strand, within PP_4286 at 4878.019 kb on + strand, within PP_4286 at 4878.183 kb on + strand, within PP_4286 at 4878.184 kb on - strand, within PP_4286 at 4878.184 kb on - strand, within PP_4286 at 4878.258 kb on + strand at 4878.259 kb on - strand at 4878.350 kb on + strand, within PP_4287 at 4878.350 kb on + strand, within PP_4287 at 4878.351 kb on - strand, within PP_4287 at 4878.383 kb on + strand, within PP_4287 at 4878.626 kb on + strand, within PP_4287 at 4878.626 kb on + strand, within PP_4287 at 4878.627 kb on - strand, within PP_4287 at 4878.627 kb on - strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.628 kb on + strand, within PP_4287 at 4878.791 kb on + strand at 4878.792 kb on - strand at 4878.792 kb on - strand at 4878.792 kb on - strand at 4878.827 kb on + strand at 4878.828 kb on - strand at 4878.828 kb on - strand at 4878.828 kb on - strand at 4878.828 kb on - strand at 4878.836 kb on + strand at 4878.836 kb on + strand at 4878.837 kb on - strand at 4878.837 kb on - strand at 4878.854 kb on + strand at 4878.855 kb on - strand at 4878.855 kb on - strand at 4879.150 kb on + strand, within PP_4288 at 4879.178 kb on + strand, within PP_4288 at 4879.179 kb on - strand, within PP_4288 at 4879.196 kb on + strand, within PP_4288 at 4879.196 kb on + strand, within PP_4288 at 4879.200 kb on + strand, within PP_4288 at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.302 kb on + strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.303 kb on - strand at 4879.345 kb on - strand at 4879.383 kb on + strand at 4879.383 kb on + strand at 4879.383 kb on + strand at 4879.383 kb on + strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.384 kb on - strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.387 kb on + strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.388 kb on - strand at 4879.478 kb on + strand at 4879.479 kb on - strand at 4879.564 kb on + strand, within PP_4289 at 4879.564 kb on + strand, within PP_4289 at 4879.564 kb on + strand, within PP_4289 at 4879.564 kb on + strand, within PP_4289 at 4879.565 kb on - strand, within PP_4289 at 4879.565 kb on - strand, within PP_4289 at 4879.568 kb on + strand, within PP_4289 at 4879.569 kb on - strand, within PP_4289 at 4879.583 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.640 kb on + strand, within PP_4289 at 4879.641 kb on - strand, within PP_4289 at 4879.641 kb on - strand, within PP_4289 at 4879.641 kb on - strand, within PP_4289 at 4879.686 kb on - strand, within PP_4289 at 4879.703 kb on + strand at 4879.703 kb on + strand, within PP_4289 at 4879.787 kb on + strand, within PP_4289 at 4879.787 kb on + strand, within PP_4289 at 4879.788 kb on - strand, within PP_4289 at 4879.788 kb on - strand, within PP_4289
Per-strain Table
Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. remove 4,877,300 - -2.6 4,877,328 + +0.0 4,877,455 - PP_4286 0.11 -1.5 4,877,574 + PP_4286 0.24 -0.9 4,877,574 + PP_4286 0.24 -0.5 4,877,574 + PP_4286 0.24 -1.5 4,877,599 + PP_4286 0.27 +1.1 4,877,600 - PP_4286 0.27 -1.8 4,877,842 - PP_4286 0.53 -1.4 4,877,902 - PP_4286 0.59 -0.5 4,877,916 + PP_4286 0.61 -0.1 4,877,916 + PP_4286 0.61 -1.3 4,877,917 - PP_4286 0.61 +0.5 4,877,917 - PP_4286 0.61 -1.2 4,877,982 + PP_4286 0.68 +0.6 4,877,982 + PP_4286 0.68 -1.6 4,877,982 + PP_4286 0.68 -0.5 4,877,982 + PP_4286 0.68 -1.3 4,878,019 + PP_4286 0.72 -0.0 4,878,019 + PP_4286 0.72 +0.7 4,878,183 + PP_4286 0.90 -0.9 4,878,184 - PP_4286 0.90 -2.2 4,878,184 - PP_4286 0.90 +0.7 4,878,258 + +0.4 4,878,259 - -0.4 4,878,350 + PP_4287 0.14 -0.9 4,878,350 + PP_4287 0.14 -1.2 4,878,351 - PP_4287 0.14 -0.6 4,878,383 + PP_4287 0.20 -0.1 4,878,626 + PP_4287 0.67 -0.1 4,878,626 + PP_4287 0.67 -0.3 4,878,627 - PP_4287 0.68 -1.0 4,878,627 - PP_4287 0.68 +0.1 4,878,628 + PP_4287 0.68 -3.0 4,878,628 + PP_4287 0.68 -0.3 4,878,628 + PP_4287 0.68 -0.2 4,878,628 + PP_4287 0.68 -1.6 4,878,628 + PP_4287 0.68 -1.2 4,878,791 + -0.5 4,878,792 - -0.4 4,878,792 - -0.2 4,878,792 - +2.3 4,878,827 + +0.3 4,878,828 - +1.9 4,878,828 - -0.2 4,878,828 - -0.0 4,878,828 - -0.2 4,878,836 + +0.5 4,878,836 + +0.6 4,878,837 - -0.7 4,878,837 - -1.0 4,878,854 + -0.0 4,878,855 - -0.0 4,878,855 - +0.2 4,879,150 + PP_4288 0.61 -1.0 4,879,178 + PP_4288 0.66 -0.8 4,879,179 - PP_4288 0.67 +0.5 4,879,196 + PP_4288 0.70 -0.3 4,879,196 + PP_4288 0.70 -0.3 4,879,200 + PP_4288 0.71 -0.1 4,879,302 + +0.3 4,879,302 + +0.4 4,879,302 + +0.4 4,879,302 + -0.2 4,879,302 + -0.0 4,879,303 - +0.8 4,879,303 - -0.0 4,879,303 - +0.7 4,879,303 - +1.4 4,879,303 - -0.4 4,879,303 - +1.7 4,879,345 - +0.3 4,879,383 + -0.8 4,879,383 + +0.5 4,879,383 + -0.0 4,879,383 + -1.0 4,879,384 - -0.1 4,879,384 - -0.1 4,879,384 - +1.7 4,879,384 - -0.0 4,879,384 - +0.6 4,879,384 - +0.4 4,879,384 - -2.5 4,879,384 - +0.2 4,879,384 - -0.7 4,879,384 - -1.7 4,879,387 + -0.0 4,879,387 + +0.4 4,879,387 + -0.1 4,879,387 + +0.1 4,879,387 + +1.3 4,879,387 + -0.2 4,879,387 + -0.9 4,879,387 + +1.5 4,879,387 + -2.3 4,879,387 + -1.1 4,879,387 + -0.8 4,879,387 + +0.6 4,879,387 + -0.8 4,879,388 - -1.3 4,879,388 - -0.0 4,879,388 - +1.6 4,879,388 - -1.2 4,879,388 - -0.4 4,879,388 - -0.3 4,879,388 - +1.4 4,879,388 - +0.2 4,879,388 - +0.1 4,879,388 - -0.1 4,879,388 - +0.3 4,879,388 - +0.1 4,879,388 - +0.1 4,879,478 + +0.1 4,879,479 - -0.2 4,879,564 + PP_4289 0.13 -1.1 4,879,564 + PP_4289 0.13 -0.2 4,879,564 + PP_4289 0.13 +1.2 4,879,564 + PP_4289 0.13 -1.0 4,879,565 - PP_4289 0.13 -0.3 4,879,565 - PP_4289 0.13 +0.2 4,879,568 + PP_4289 0.13 -0.1 4,879,569 - PP_4289 0.13 -1.6 4,879,583 + PP_4289 0.14 -0.9 4,879,640 + PP_4289 0.19 +0.0 4,879,640 + PP_4289 0.19 +1.4 4,879,640 + PP_4289 0.19 -0.9 4,879,640 + PP_4289 0.19 -0.4 4,879,640 + PP_4289 0.19 -0.4 4,879,641 - PP_4289 0.19 +0.2 4,879,641 - PP_4289 0.19 +0.6 4,879,641 - PP_4289 0.19 -0.7 4,879,686 - PP_4289 0.22 +0.1 4,879,703 + +1.9 4,879,703 + PP_4289 0.23 -0.0 4,879,787 + PP_4289 0.30 +3.9 4,879,787 + PP_4289 0.30 +0.0 4,879,788 - PP_4289 0.30 -1.1 4,879,788 - PP_4289 0.30 +0.1
Or see this region's nucleotide sequence