Strain Fitness in Pseudomonas putida KT2440 around PP_4174

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
4,715,938	+		PP_4173	0.60	+1.0
4,716,124	-		PP_4173	0.70	+0.9
4,716,187	+		PP_4173	0.73	+1.8
4,716,188	-		PP_4173	0.73	+0.9
4,716,188	-		PP_4173	0.73	+1.6
4,716,290	-		PP_4173	0.79	+0.1
4,716,319	+		PP_4173	0.80	+0.5
4,716,320	-		PP_4173	0.80	+0.1
4,716,391	+		PP_4173	0.84	+0.3
4,716,391	+		PP_4173	0.84	+1.3
4,716,391	+		PP_4173	0.84	+0.7
4,716,391	+		PP_4173	0.84	+1.0
4,716,392	-		PP_4173	0.84	+1.4
4,716,392	-		PP_4173	0.84	-0.1
4,716,490	-		PP_4173	0.89	+0.9
4,716,490	-		PP_4173	0.89	+0.9
4,716,610	-				+2.9
4,716,820	+				+1.5