Strain Fitness in Pseudomonas putida KT2440 around PP_3882

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
4,402,216	+		PP_3881	0.48	-0.5
4,402,216	+		PP_3881	0.48	+0.3
4,402,217	-		PP_3881	0.48	-0.4
4,402,314	+		PP_3881	0.54	-1.4
4,402,316	+		PP_3881	0.54	-0.8
4,402,316	+		PP_3881	0.54	-1.4
4,402,316	+		PP_3881	0.54	-1.4
4,402,316	+		PP_3881	0.54	-0.9
4,402,317	-		PP_3881	0.54	-1.0
4,402,317	-		PP_3881	0.54	-1.4
4,402,317	-		PP_3881	0.54	+0.8
4,402,318	+		PP_3881	0.54	-0.7
4,402,318	+		PP_3881	0.54	-0.7
4,402,318	+		PP_3881	0.54	-0.5
4,402,318	+		PP_3881	0.54	-1.5
4,402,318	+		PP_3881	0.54	+1.4
4,402,318	+		PP_3881	0.54	+0.1
4,402,319	-		PP_3881	0.54	-0.2
4,402,319	-		PP_3881	0.54	-0.1
4,402,369	+		PP_3881	0.57	-0.8
4,402,588	+		PP_3881	0.69	-0.3
4,402,588	+		PP_3881	0.69	-0.7
4,402,720	+		PP_3881	0.76	+0.0
4,402,720	+		PP_3881	0.76	-1.2
4,402,720	+		PP_3881	0.76	+0.1
4,402,721	-		PP_3881	0.76	-2.2
4,402,721	-		PP_3881	0.76	-0.4
4,402,817	-		PP_3881	0.81	+0.8
4,402,961	+		PP_3881	0.89	-1.0
4,402,961	+		PP_3881	0.89	+0.0
4,402,961	+		PP_3881	0.89	-1.8
4,402,961	+		PP_3881	0.89	-0.6
4,402,962	-		PP_3881	0.89	-0.2
4,403,161	+		PP_3882	0.10	+0.2
4,403,231	-		PP_3882	0.25	+0.1
4,403,231	-		PP_3882	0.25	+0.1
4,403,300	+		PP_3882	0.40	-0.2
4,403,301	-		PP_3882	0.40	-2.0
4,403,352	-		PP_3882	0.51	-0.2
4,403,487	+		PP_3882	0.80	-0.7
4,403,488	-		PP_3882	0.80	-0.9
4,403,727	+				+0.0
4,403,763	+		PP_3883	0.15	-0.6
4,404,000	-		PP_3883	0.88	-0.4
4,404,000	-		PP_3883	0.88	-1.1
4,404,094	+		PP_3884	0.17	-0.1
4,404,095	-		PP_3884	0.17	-0.5
4,404,240	-		PP_3884	0.62	-0.1
4,404,285	-		PP_3884	0.76	-0.7
4,404,453	+				-0.6
4,404,478	+				-1.5
4,404,478	+				+0.7
4,404,478	+				-0.2
4,404,478	+				+1.5
4,404,480	+				-0.7
4,404,480	+				-2.6
4,404,480	+				+0.9
4,404,481	-				-1.3
4,404,489	-				+0.0