Strain Fitness in Pseudomonas putida KT2440 around PP_3880

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
4,400,241	+		PP_3879	0.28	+0.1
4,400,242	-		PP_3879	0.28	-0.2
4,400,242	-		PP_3879	0.28	-1.1
4,400,271	+		PP_3879	0.30	-0.2
4,400,271	+				+0.6
4,400,293	+		PP_3879	0.32	+0.2
4,400,294	-		PP_3879	0.32	+1.6
4,400,316	+		PP_3879	0.34	+1.3
4,400,317	-		PP_3879	0.34	+1.0
4,400,575	-		PP_3879	0.54	+0.3
4,400,575	-		PP_3879	0.54	-0.0
4,400,641	-		PP_3879	0.59	+0.6
4,400,641	-		PP_3879	0.59	+1.2
4,400,641	-		PP_3879	0.59	+0.2
4,400,641	-		PP_3879	0.59	-1.0
4,400,815	-		PP_3879	0.73	+0.3
4,400,865	+		PP_3879	0.77	-1.9
4,400,866	-				+0.1
4,400,907	+		PP_3879	0.80	-0.4
4,400,907	+		PP_3879	0.80	-0.3
4,400,907	+		PP_3879	0.80	+0.9
4,400,972	+		PP_3879	0.85	-1.8
4,400,973	-		PP_3879	0.85	+0.4
4,400,981	+		PP_3879	0.86	-1.3
4,401,023	-		PP_3879	0.89	-1.7
4,401,023	-		PP_3879	0.89	-0.1
4,401,157	+				+0.9
4,401,157	+				+0.6
4,401,157	+				-0.3
4,401,158	-				+0.3
4,401,158	-				-0.1
4,401,158	-				-1.5
4,401,158	-				-0.9
4,401,190	+		PP_3880	0.16	-1.9
4,401,355	-				-0.1
4,401,445	-				+0.1
4,401,532	-		PP_3881	0.10	-0.1
4,401,532	-		PP_3881	0.10	+1.0
4,401,663	+		PP_3881	0.18	-0.4
4,401,677	+		PP_3881	0.18	-0.2
4,401,727	+		PP_3881	0.21	+1.1
4,401,806	+		PP_3881	0.25	-0.5
4,401,806	+		PP_3881	0.25	+0.4
4,401,949	+		PP_3881	0.33	+0.2
4,401,979	+		PP_3881	0.35	-0.1
4,401,980	-		PP_3881	0.35	+0.0
4,401,980	-		PP_3881	0.35	-0.5
4,401,980	-		PP_3881	0.35	-0.9
4,401,980	-		PP_3881	0.35	-1.2
4,402,022	+		PP_3881	0.37	-2.0
4,402,022	+		PP_3881	0.37	+0.5
4,402,022	+		PP_3881	0.37	+0.9
4,402,023	-		PP_3881	0.37	-1.2
4,402,216	+		PP_3881	0.48	-0.5
4,402,216	+		PP_3881	0.48	+0.3
4,402,217	-		PP_3881	0.48	-0.4
4,402,314	+		PP_3881	0.54	-1.4
4,402,316	+		PP_3881	0.54	-0.8
4,402,316	+		PP_3881	0.54	-1.4
4,402,316	+		PP_3881	0.54	-1.4
4,402,316	+		PP_3881	0.54	-0.9
4,402,317	-		PP_3881	0.54	-1.0
4,402,317	-		PP_3881	0.54	-1.4
4,402,317	-		PP_3881	0.54	+0.8
4,402,318	+		PP_3881	0.54	-0.7
4,402,318	+		PP_3881	0.54	-0.7
4,402,318	+		PP_3881	0.54	-0.5
4,402,318	+		PP_3881	0.54	-1.5
4,402,318	+		PP_3881	0.54	+1.4
4,402,318	+		PP_3881	0.54	+0.1
4,402,319	-		PP_3881	0.54	-0.2
4,402,319	-		PP_3881	0.54	-0.1