Strain Fitness in Pseudomonas putida KT2440 around PP_2903
Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. |
|---|---|---|---|---|---|
| remove | |||||
| 3,300,180 | - | -1.2 | |||
| 3,301,292 | - | PP_2903 | 0.78 | -0.1 | |
| 3,301,292 | - | PP_2903 | 0.78 | -2.0 | |
| 3,301,292 | - | PP_2903 | 0.78 | -0.6 | |
| 3,301,596 | + | +0.1 | |||
| 3,301,596 | + | +0.2 |
Or see this region's nucleotide sequence