Strain Fitness in Pseudomonas putida KT2440 around PP_2826

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
3,223,600	+		PP_2824	0.51	+0.7
3,223,601	-		PP_2824	0.51	+0.7
3,223,710	+		PP_2824	0.67	+0.3
3,223,711	-		PP_2824	0.67	-1.1
3,223,711	-		PP_2824	0.67	-0.2
3,223,922	+				-0.6
3,223,934	-				-0.5
3,223,961	+				+0.4
3,223,961	+				+0.4
3,223,962	-				+0.7
3,224,030	+				-0.7
3,224,129	+		PP_2825	0.27	-1.1
3,224,130	-		PP_2825	0.27	+0.5
3,224,130	-		PP_2825	0.27	+0.6
3,224,130	-		PP_2825	0.27	+2.9
3,224,131	+		PP_2825	0.27	+0.2
3,224,132	-		PP_2825	0.28	-1.8
3,224,132	-				-0.3
3,224,204	-		PP_2825	0.43	+0.0
3,224,210	+		PP_2825	0.44	+0.4
3,224,316	-		PP_2825	0.67	+1.1
3,224,405	-		PP_2825	0.86	-1.2
3,224,512	+				-0.3
3,224,534	-				-1.4
3,224,677	-		PP_2826	0.19	-0.6
3,224,677	-		PP_2826	0.19	-1.1
3,224,952	+		PP_2826	0.49	-1.3
3,224,953	-		PP_2826	0.49	+0.7
3,225,006	+		PP_2826	0.55	-2.6
3,225,433	+				+0.1
3,225,433	+				-0.4
3,225,433	+				-1.9
3,225,434	-				+0.2
3,225,456	+				+0.4
3,225,457	-				+1.9
3,225,472	+				+0.3
3,225,543	+				+0.5
3,225,594	+				+1.9
3,225,598	+				+0.5