Strain Fitness in Pseudomonas putida KT2440 around PP_2786

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
3,172,884	+		PP_2785	0.30	+0.7
3,172,884	+		PP_2785	0.30	-1.3
3,173,654	+				-0.4
3,173,769	-				-1.1
3,174,025	+		PP_2786	0.23	-0.5
3,174,026	-		PP_2786	0.23	-0.7
3,174,067	+		PP_2786	0.28	+0.2
3,174,068	-		PP_2786	0.28	-0.4
3,174,158	-		PP_2786	0.39	-0.1
3,174,229	+		PP_2786	0.48	-0.8
3,174,235	+		PP_2786	0.48	+0.9
3,174,269	-		PP_2786	0.52	+3.9
3,174,269	-		PP_2786	0.52	+0.1
3,174,316	+		PP_2786	0.58	-0.2
3,174,434	+		PP_2786	0.72	+0.4
3,174,435	-		PP_2786	0.72	-0.2
3,174,501	+		PP_2786	0.80	-0.3
3,174,501	+		PP_2786	0.80	+2.9
3,174,501	+		PP_2786	0.80	-0.3
3,174,568	+		PP_2786	0.88	+0.1
3,174,568	+		PP_2786	0.88	-1.9
3,174,647	-				+0.3
3,174,710	-				+3.9
3,174,710	-				+0.3
3,174,772	+				+0.2
3,174,782	-				-0.4
3,174,818	-				+0.0
3,174,887	-				+0.3
3,174,887	-				+1.0
3,174,887	-				+1.0
3,175,439	-		PP_2787	0.28	-0.8
3,175,468	+		PP_2787	0.29	+2.9
3,175,469	-		PP_2787	0.29	-0.0
3,175,656	+		PP_2787	0.37	+0.5
3,175,656	+		PP_2787	0.37	+0.0