Strain Fitness in Pseudomonas putida KT2440 around PP_1376

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1375 and PP_1376 are separated by 320 nucleotidesPP_1376 and PP_1377 are separated by 326 nucleotides PP_1375: PP_1375 - transcription regulatory protein (pca regulon), at 1,566,321 to 1,567,196 _1375 PP_1376: PP_1376 - 4-hydroxybenzoate transporter, at 1,567,517 to 1,568,863 _1376 PP_1377: PP_1377 - beta-ketoadipyl-CoA thiolase, at 1,569,190 to 1,570,392 _1377 Position (kb) 1567 1568 1569Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1566.617 kb on + strand, within PP_1375at 1566.617 kb on + strand, within PP_1375at 1566.660 kb on + strand, within PP_1375at 1566.660 kb on + strand, within PP_1375at 1566.660 kb on + strand, within PP_1375at 1566.771 kb on + strand, within PP_1375at 1566.771 kb on + strand, within PP_1375at 1566.771 kb on + strand, within PP_1375at 1566.771 kb on + strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.772 kb on - strand, within PP_1375at 1566.773 kb on + strand, within PP_1375at 1566.773 kb on + strand, within PP_1375at 1566.773 kb on + strand, within PP_1375at 1566.773 kb on + strand, within PP_1375at 1566.773 kb on + strand, within PP_1375at 1566.773 kb on + strand, within PP_1375at 1566.774 kb on - strand, within PP_1375at 1566.774 kb on - strand, within PP_1375at 1566.774 kb on - strand, within PP_1375at 1566.774 kb on - strand, within PP_1375at 1566.774 kb on - strand, within PP_1375at 1566.774 kb on - strand, within PP_1375at 1566.775 kb on + strand, within PP_1375at 1566.843 kb on + strand, within PP_1375at 1566.844 kb on - strand, within PP_1375at 1566.903 kb on + strand, within PP_1375at 1566.903 kb on + strand, within PP_1375at 1566.904 kb on - strand, within PP_1375at 1567.010 kb on - strand, within PP_1375at 1567.010 kb on - strand, within PP_1375at 1567.056 kb on + strand, within PP_1375at 1567.056 kb on + strand, within PP_1375at 1567.057 kb on - strand, within PP_1375at 1567.057 kb on - strand, within PP_1375at 1567.098 kb on - strand, within PP_1375at 1567.306 kb on + strandat 1567.307 kb on - strandat 1567.373 kb on + strandat 1567.373 kb on + strandat 1567.373 kb on + strandat 1567.374 kb on - strandat 1567.374 kb on - strandat 1567.374 kb on - strandat 1567.374 kb on - strandat 1567.411 kb on + strandat 1567.417 kb on + strandat 1567.417 kb on + strandat 1567.418 kb on - strandat 1567.418 kb on - strandat 1567.419 kb on + strandat 1567.419 kb on + strandat 1567.419 kb on + strandat 1567.420 kb on - strandat 1567.440 kb on + strandat 1567.440 kb on + strandat 1567.440 kb on + strandat 1567.441 kb on - strandat 1567.441 kb on - strandat 1567.441 kb on - strandat 1567.441 kb on - strandat 1567.442 kb on + strandat 1567.442 kb on + strandat 1567.442 kb on + strandat 1567.442 kb on + strandat 1567.443 kb on - strandat 1567.443 kb on - strandat 1567.462 kb on + strandat 1567.463 kb on - strandat 1567.463 kb on - strandat 1567.509 kb on + strandat 1567.515 kb on + strandat 1567.515 kb on + strandat 1567.515 kb on + strandat 1567.515 kb on + strandat 1567.515 kb on + strandat 1567.516 kb on - strandat 1567.853 kb on + strand, within PP_1376at 1567.853 kb on + strandat 1567.854 kb on - strand, within PP_1376at 1567.931 kb on - strand, within PP_1376at 1567.949 kb on + strand, within PP_1376at 1567.950 kb on - strand, within PP_1376at 1568.297 kb on + strand, within PP_1376at 1568.297 kb on + strand, within PP_1376at 1568.297 kb on + strand, within PP_1376at 1568.297 kb on + strand, within PP_1376at 1568.297 kb on + strand, within PP_1376at 1568.298 kb on - strand, within PP_1376at 1568.330 kb on + strand, within PP_1376at 1568.354 kb on + strand, within PP_1376at 1568.354 kb on + strand, within PP_1376at 1568.355 kb on - strand, within PP_1376at 1568.355 kb on - strand, within PP_1376at 1568.454 kb on + strand, within PP_1376at 1568.455 kb on - strand, within PP_1376at 1568.505 kb on + strand, within PP_1376at 1568.505 kb on + strand, within PP_1376at 1568.505 kb on + strand, within PP_1376at 1568.505 kb on + strand, within PP_1376at 1568.506 kb on - strand, within PP_1376at 1568.544 kb on - strand, within PP_1376at 1568.580 kb on + strand, within PP_1376at 1568.605 kb on + strand, within PP_1376at 1568.657 kb on + strand, within PP_1376at 1568.685 kb on + strand, within PP_1376at 1568.685 kb on + strand, within PP_1376at 1568.967 kb on + strandat 1569.020 kb on + strandat 1569.021 kb on - strandat 1569.029 kb on + strandat 1569.029 kb on + strandat 1569.030 kb on - strandat 1569.030 kb on - strandat 1569.041 kb on + strandat 1569.052 kb on + strandat 1569.200 kb on + strandat 1569.200 kb on + strandat 1569.200 kb on + strandat 1569.200 kb on + strandat 1569.201 kb on - strandat 1569.201 kb on - strandat 1569.201 kb on - strandat 1569.336 kb on - strand, within PP_1377at 1569.336 kb on - strand, within PP_1377at 1569.336 kb on - strand, within PP_1377at 1569.661 kb on + strand, within PP_1377at 1569.709 kb on + strand, within PP_1377at 1569.710 kb on - strand, within PP_1377at 1569.817 kb on - strand, within PP_1377

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Per-strain Table

Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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1,566,617 + PP_1375 0.34 +1.1
1,566,617 + PP_1375 0.34 +0.9
1,566,660 + PP_1375 0.39 +0.3
1,566,660 + PP_1375 0.39 -0.0
1,566,660 + PP_1375 0.39 +1.3
1,566,771 + PP_1375 0.51 -1.0
1,566,771 + PP_1375 0.51 -2.0
1,566,771 + PP_1375 0.51 -0.3
1,566,771 + PP_1375 0.51 -1.3
1,566,772 - PP_1375 0.51 +0.1
1,566,772 - PP_1375 0.51 +0.6
1,566,772 - PP_1375 0.51 -0.6
1,566,772 - PP_1375 0.51 -0.4
1,566,772 - PP_1375 0.51 -0.2
1,566,772 - PP_1375 0.51 -0.3
1,566,772 - PP_1375 0.51 +0.5
1,566,772 - PP_1375 0.51 -0.6
1,566,772 - PP_1375 0.51 -0.2
1,566,773 + PP_1375 0.52 +0.2
1,566,773 + PP_1375 0.52 +0.3
1,566,773 + PP_1375 0.52 -0.2
1,566,773 + PP_1375 0.52 +0.6
1,566,773 + PP_1375 0.52 +0.7
1,566,773 + PP_1375 0.52 -0.3
1,566,774 - PP_1375 0.52 +0.4
1,566,774 - PP_1375 0.52 -0.2
1,566,774 - PP_1375 0.52 +0.9
1,566,774 - PP_1375 0.52 -0.3
1,566,774 - PP_1375 0.52 +1.6
1,566,774 - PP_1375 0.52 +0.1
1,566,775 + PP_1375 0.52 +3.1
1,566,843 + PP_1375 0.60 -1.0
1,566,844 - PP_1375 0.60 +0.0
1,566,903 + PP_1375 0.66 +1.1
1,566,903 + PP_1375 0.66 -0.3
1,566,904 - PP_1375 0.67 -0.7
1,567,010 - PP_1375 0.79 +1.4
1,567,010 - PP_1375 0.79 -1.2
1,567,056 + PP_1375 0.84 +0.7
1,567,056 + PP_1375 0.84 -0.1
1,567,057 - PP_1375 0.84 -0.1
1,567,057 - PP_1375 0.84 +0.4
1,567,098 - PP_1375 0.89 +0.6
1,567,306 + -0.4
1,567,307 - -1.0
1,567,373 + +2.3
1,567,373 + -0.7
1,567,373 + +0.3
1,567,374 - -0.1
1,567,374 - +0.5
1,567,374 - -0.1
1,567,374 - +0.3
1,567,411 + +0.1
1,567,417 + +1.1
1,567,417 + +0.6
1,567,418 - -0.4
1,567,418 - +1.4
1,567,419 + -0.9
1,567,419 + +2.3
1,567,419 + +0.6
1,567,420 - +0.1
1,567,440 + +1.2
1,567,440 + +1.3
1,567,440 + -2.0
1,567,441 - +0.2
1,567,441 - -1.2
1,567,441 - -0.4
1,567,441 - +0.1
1,567,442 + +0.3
1,567,442 + -0.2
1,567,442 + +0.1
1,567,442 + +0.6
1,567,443 - +0.4
1,567,443 - -1.1
1,567,462 + +2.9
1,567,463 - -0.5
1,567,463 - -2.8
1,567,509 + +0.1
1,567,515 + -2.1
1,567,515 + +0.4
1,567,515 + +0.3
1,567,515 + -0.6
1,567,515 + -1.0
1,567,516 - -0.6
1,567,853 + PP_1376 0.25 -1.5
1,567,853 + +2.1
1,567,854 - PP_1376 0.25 -0.5
1,567,931 - PP_1376 0.31 -0.3
1,567,949 + PP_1376 0.32 -0.1
1,567,950 - PP_1376 0.32 -0.5
1,568,297 + PP_1376 0.58 -0.7
1,568,297 + PP_1376 0.58 -0.1
1,568,297 + PP_1376 0.58 -0.3
1,568,297 + PP_1376 0.58 -1.4
1,568,297 + PP_1376 0.58 -1.0
1,568,298 - PP_1376 0.58 -1.2
1,568,330 + PP_1376 0.60 +2.5
1,568,354 + PP_1376 0.62 -0.5
1,568,354 + PP_1376 0.62 -1.2
1,568,355 - PP_1376 0.62 -0.2
1,568,355 - PP_1376 0.62 -0.9
1,568,454 + PP_1376 0.70 -0.9
1,568,455 - PP_1376 0.70 -0.1
1,568,505 + PP_1376 0.73 -1.1
1,568,505 + PP_1376 0.73 -2.5
1,568,505 + PP_1376 0.73 -0.4
1,568,505 + PP_1376 0.73 +2.3
1,568,506 - PP_1376 0.73 +0.3
1,568,544 - PP_1376 0.76 -2.0
1,568,580 + PP_1376 0.79 -1.5
1,568,605 + PP_1376 0.81 -0.7
1,568,657 + PP_1376 0.85 -0.9
1,568,685 + PP_1376 0.87 -0.7
1,568,685 + PP_1376 0.87 -1.7
1,568,967 + -0.2
1,569,020 + +0.4
1,569,021 - +1.3
1,569,029 + -1.3
1,569,029 + +1.0
1,569,030 - -1.0
1,569,030 - +2.9
1,569,041 + -0.8
1,569,052 + -0.5
1,569,200 + -0.5
1,569,200 + -0.1
1,569,200 + +1.0
1,569,200 + -0.3
1,569,201 - -0.3
1,569,201 - -0.5
1,569,201 - +0.4
1,569,336 - PP_1377 0.12 -0.5
1,569,336 - PP_1377 0.12 -0.8
1,569,336 - PP_1377 0.12 -0.6
1,569,661 + PP_1377 0.39 +3.9
1,569,709 + PP_1377 0.43 +0.1
1,569,710 - PP_1377 0.43 -0.9
1,569,817 - PP_1377 0.52 +0.7

Or see this region's nucleotide sequence