Strain Fitness in Pseudomonas putida KT2440 around PP_1229

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
1,404,764	+		PP_1228	0.56	-0.0
1,405,004	+		PP_1228	0.67	-1.4
1,405,005	-		PP_1228	0.67	-0.6
1,405,005	-		PP_1228	0.67	+0.2
1,405,227	+		PP_1228	0.78	-0.4
1,405,278	+		PP_1228	0.80	+0.3
1,405,278	+		PP_1228	0.80	-0.1
1,405,279	-		PP_1228	0.81	+2.9
1,405,324	-		PP_1228	0.83	-0.3
1,405,421	+		PP_1228	0.87	-0.2
1,405,421	+		PP_1228	0.87	-1.3
1,405,422	-		PP_1228	0.87	+0.3
1,405,453	-		PP_1228	0.89	-0.7
1,405,467	+		PP_1228	0.90	-1.8
1,405,761	+				-1.3
1,405,761	+				+0.2
1,405,762	-				-1.1
1,405,762	-				-0.6
1,405,806	+				-0.6
1,405,832	-				+2.9
1,405,908	-		PP_1229	0.12	+0.9
1,405,914	+		PP_1229	0.12	-1.1
1,405,914	+		PP_1229	0.12	-0.1
1,405,915	-		PP_1229	0.12	+0.3
1,405,915	-		PP_1229	0.12	-1.7
1,405,939	+		PP_1229	0.14	-0.9
1,405,939	+		PP_1229	0.14	+0.5
1,405,939	+		PP_1229	0.14	+0.1
1,405,959	+		PP_1229	0.16	+1.2
1,405,959	+		PP_1229	0.16	+0.2
1,405,960	-		PP_1229	0.16	-0.3
1,406,076	-		PP_1229	0.24	+0.7
1,406,162	+		PP_1229	0.31	+0.7
1,406,162	+		PP_1229	0.31	+0.3
1,406,162	+		PP_1229	0.31	-2.3
1,406,163	-		PP_1229	0.31	-0.5
1,406,166	+		PP_1229	0.31	+0.6
1,406,166	+		PP_1229	0.31	+0.2
1,406,166	+		PP_1229	0.31	-1.6
1,406,166	+		PP_1229	0.31	+0.1
1,406,166	+		PP_1229	0.31	-1.8
1,406,167	-		PP_1229	0.31	-1.9
1,406,167	-		PP_1229	0.31	-0.4
1,406,268	+		PP_1229	0.38	-0.8
1,406,269	-		PP_1229	0.39	+0.8
1,406,328	+		PP_1229	0.43	-0.6
1,406,328	+		PP_1229	0.43	+1.8
1,406,328	+		PP_1229	0.43	-1.2
1,406,329	-		PP_1229	0.43	-0.6
1,406,329	-		PP_1229	0.43	-0.5
1,406,343	+		PP_1229	0.44	-1.6
1,406,344	-		PP_1229	0.44	-1.4
1,406,579	+		PP_1229	0.61	+0.3
1,406,589	+		PP_1229	0.62	-0.1
1,406,590	-		PP_1229	0.62	-0.6
1,406,746	-		PP_1229	0.74	-0.4
1,406,759	+		PP_1229	0.75	-1.4
1,406,787	+		PP_1229	0.77	+0.2
1,406,788	-		PP_1229	0.77	+0.2
1,406,788	-		PP_1229	0.77	-1.6
1,406,795	+		PP_1229	0.77	-0.1
1,406,850	+		PP_1229	0.81	+0.1
1,406,850	+		PP_1229	0.81	+1.0
1,406,850	+		PP_1229	0.81	-0.7
1,406,850	+		PP_1229	0.81	-0.2
1,406,850	+		PP_1229	0.81	-1.2
1,406,851	-		PP_1229	0.82	+0.1
1,406,851	-		PP_1229	0.82	-1.1
1,406,851	-		PP_1229	0.82	-0.1
1,406,851	-		PP_1229	0.82	-0.6
1,406,856	+		PP_1229	0.82	+0.0
1,406,885	+		PP_1229	0.84	-2.2
1,406,898	+		PP_1229	0.85	-0.6
1,406,898	+		PP_1229	0.85	-0.8
1,406,898	+		PP_1229	0.85	-1.3
1,406,899	-		PP_1229	0.85	-0.7
1,406,899	-		PP_1229	0.85	-1.9
1,406,899	-		PP_1229	0.85	-2.0
1,406,899	-		PP_1229	0.85	-0.7
1,406,940	+		PP_1229	0.88	+0.1
1,406,941	-		PP_1229	0.88	+0.3
1,406,951	+				+1.9
1,406,951	+		PP_1229	0.89	+0.1
1,406,952	-		PP_1229	0.89	-1.2
1,407,015	+				+0.9
1,407,145	+				+0.0
1,407,145	+				-0.1
1,407,146	-				-0.2
1,407,146	-				-0.3
1,407,196	+				+0.1
1,407,305	+				-2.3
1,407,480	+				-1.5
1,407,480	+				+0.5
1,407,524	+				+0.1
1,407,543	+				+1.6
1,407,544	-				+0.2
1,407,544	-				+0.0
1,407,604	+				+0.5
1,407,605	-				+0.6
1,407,621	-				-0.4
1,407,621	-				-0.4
1,407,709	+		PP_1230	0.11	-0.1
1,407,709	+		PP_1230	0.11	-0.6
1,407,710	-		PP_1230	0.11	-1.3