Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0584 and PP_0585 are separated by 167 nucleotides PP_0585 and PP_0586 overlap by 4 nucleotides
PP_0584: PP_0584 - Methyl-accepting chemotaxis transducer, at 681,329 to 683,272
_0584
PP_0585: PP_0585 - putative metal-sensitive transcriptional regulator, MerR family, at 683,440 to 683,850
_0585
PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246
_0586
Position (kb) 683
684 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 682.474 kb on - strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.488 kb on + strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.489 kb on - strand, within PP_0584 at 682.788 kb on + strand, within PP_0584 at 682.788 kb on + strand, within PP_0584 at 682.791 kb on + strand, within PP_0584 at 682.792 kb on - strand, within PP_0584 at 682.863 kb on + strand, within PP_0584 at 682.864 kb on - strand, within PP_0584 at 682.929 kb on + strand, within PP_0584 at 682.929 kb on + strand, within PP_0584 at 682.935 kb on + strand, within PP_0584 at 682.936 kb on - strand, within PP_0584 at 683.005 kb on - strand, within PP_0584 at 683.005 kb on - strand, within PP_0584 at 683.025 kb on + strand, within PP_0584 at 683.025 kb on + strand, within PP_0584 at 683.025 kb on + strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.026 kb on - strand, within PP_0584 at 683.076 kb on + strand, within PP_0584 at 683.076 kb on + strand, within PP_0584 at 683.076 kb on + strand, within PP_0584 at 683.076 kb on + strand at 683.313 kb on + strand at 683.313 kb on + strand at 683.313 kb on + strand at 683.314 kb on - strand at 683.314 kb on - strand at 683.343 kb on - strand at 683.343 kb on - strand at 683.362 kb on - strand at 683.365 kb on + strand at 683.413 kb on + strand at 683.413 kb on + strand at 683.455 kb on - strand at 683.735 kb on + strand, within PP_0585 at 683.736 kb on - strand, within PP_0585 at 683.792 kb on + strand, within PP_0585 at 683.998 kb on + strand at 683.998 kb on + strand at 683.999 kb on - strand at 683.999 kb on - strand at 683.999 kb on - strand at 684.038 kb on - strand at 684.186 kb on - strand, within PP_0586 at 684.798 kb on + strand, within PP_0586 at 684.799 kb on - strand, within PP_0586
Per-strain Table
Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. remove 682,474 - PP_0584 0.59 +1.1 682,488 + PP_0584 0.60 +0.4 682,488 + PP_0584 0.60 -0.5 682,488 + PP_0584 0.60 -0.5 682,488 + PP_0584 0.60 -1.7 682,488 + PP_0584 0.60 +0.1 682,489 - PP_0584 0.60 +1.6 682,489 - PP_0584 0.60 +1.7 682,489 - PP_0584 0.60 -0.4 682,489 - PP_0584 0.60 +0.8 682,489 - PP_0584 0.60 -0.5 682,788 + PP_0584 0.75 -0.6 682,788 + PP_0584 0.75 -1.6 682,791 + PP_0584 0.75 -0.7 682,792 - PP_0584 0.75 +0.2 682,863 + PP_0584 0.79 -0.3 682,864 - PP_0584 0.79 +1.3 682,929 + PP_0584 0.82 +0.5 682,929 + PP_0584 0.82 -1.2 682,935 + PP_0584 0.83 -1.7 682,936 - PP_0584 0.83 -0.1 683,005 - PP_0584 0.86 -0.6 683,005 - PP_0584 0.86 -0.1 683,025 + PP_0584 0.87 -0.1 683,025 + PP_0584 0.87 +0.5 683,025 + PP_0584 0.87 +1.6 683,026 - PP_0584 0.87 -0.1 683,026 - PP_0584 0.87 +0.0 683,026 - PP_0584 0.87 -0.4 683,026 - PP_0584 0.87 -0.6 683,026 - PP_0584 0.87 +0.7 683,026 - PP_0584 0.87 +0.4 683,076 + PP_0584 0.90 +1.1 683,076 + PP_0584 0.90 -1.1 683,076 + PP_0584 0.90 -0.6 683,076 + +0.9 683,313 + +0.7 683,313 + -0.5 683,313 + +0.7 683,314 - -1.2 683,314 - +3.9 683,343 - -0.7 683,343 - +0.4 683,362 - -0.8 683,365 + -0.8 683,413 + +1.2 683,413 + +0.1 683,455 - +0.1 683,735 + PP_0585 0.72 -2.1 683,736 - PP_0585 0.72 +0.3 683,792 + PP_0585 0.86 -0.9 683,998 + +0.3 683,998 + +0.0 683,999 - -0.7 683,999 - +1.9 683,999 - +0.2 684,038 - -2.6 684,186 - PP_0586 0.14 +1.4 684,798 + PP_0586 0.40 +1.6 684,799 - PP_0586 0.40 -0.9
Or see this region's nucleotide sequence