Strain Fitness in Pseudomonas putida KT2440 around PP_0571

Experiment: 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0570 and PP_0571 are separated by 151 nucleotidesPP_0571 and PP_0572 are separated by 35 nucleotides PP_0570: PP_0570 - lipoprotein of unknown function, at 663,135 to 668,036 _0570 PP_0571: PP_0571 - conserved membrane protein of unknown function, at 668,188 to 668,523 _0571 PP_0572: PP_0572 - peptidoglycan glycosyltransferase, at 668,559 to 670,913 _0572 Position (kb) 668 669Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 667.524 kb on + strand, within PP_0570at 667.524 kb on + strand, within PP_0570at 667.525 kb on - strand, within PP_0570at 667.602 kb on + strandat 667.602 kb on + strandat 667.602 kb on + strandat 667.603 kb on - strandat 667.610 kb on + strandat 667.611 kb on - strandat 667.849 kb on - strandat 667.861 kb on + strandat 667.864 kb on - strandat 667.891 kb on - strandat 667.891 kb on - strandat 667.912 kb on - strandat 667.942 kb on - strandat 667.942 kb on - strandat 668.282 kb on + strand, within PP_0571at 668.282 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.473 kb on + strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.474 kb on - strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strandat 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.481 kb on + strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.482 kb on - strand, within PP_0571at 668.570 kb on - strandat 668.771 kb on - strandat 668.817 kb on + strand, within PP_0572at 668.817 kb on + strand, within PP_0572at 668.836 kb on - strand, within PP_0572at 668.966 kb on + strand, within PP_0572at 668.992 kb on + strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 668.993 kb on - strand, within PP_0572at 669.255 kb on + strand, within PP_0572at 669.256 kb on - strand, within PP_0572at 669.389 kb on + strand, within PP_0572at 669.389 kb on + strand, within PP_0572at 669.465 kb on - strand, within PP_0572at 669.465 kb on - strand, within PP_0572at 669.516 kb on + strand, within PP_0572at 669.516 kb on + strand, within PP_0572

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Per-strain Table

Position Strand Gene LocusTag Fraction 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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667,524 + PP_0570 0.90 +2.9
667,524 + PP_0570 0.90 +0.2
667,525 - PP_0570 0.90 +1.7
667,602 + +2.5
667,602 + -0.1
667,602 + -1.3
667,603 - +0.2
667,610 + -0.2
667,611 - -0.7
667,849 - -0.3
667,861 + -1.5
667,864 - +1.0
667,891 - +2.9
667,891 - +1.4
667,912 - -1.0
667,942 - +0.2
667,942 - +2.9
668,282 + PP_0571 0.28 -0.0
668,282 + PP_0571 0.28 +0.0
668,473 + PP_0571 0.85 +0.5
668,473 + PP_0571 0.85 -0.1
668,473 + PP_0571 0.85 +0.5
668,473 + PP_0571 0.85 +0.9
668,473 + PP_0571 0.85 +1.3
668,474 - PP_0571 0.85 +3.9
668,474 - PP_0571 0.85 +0.2
668,474 - PP_0571 0.85 +0.7
668,474 - PP_0571 0.85 -1.3
668,481 + PP_0571 0.87 +0.9
668,481 + PP_0571 0.87 -0.9
668,481 + PP_0571 0.87 +1.5
668,481 + PP_0571 0.87 +1.8
668,481 + PP_0571 0.87 +0.4
668,481 + PP_0571 0.87 -0.1
668,481 + PP_0571 0.87 -0.9
668,481 + PP_0571 0.87 +0.6
668,481 + PP_0571 0.87 +0.2
668,481 + PP_0571 0.87 -1.6
668,481 + +1.6
668,481 + PP_0571 0.87 -0.5
668,481 + PP_0571 0.87 -1.0
668,481 + PP_0571 0.87 +0.8
668,481 + PP_0571 0.87 +0.6
668,482 - PP_0571 0.88 -0.2
668,482 - PP_0571 0.88 -0.7
668,482 - PP_0571 0.88 +0.2
668,482 - PP_0571 0.88 -2.5
668,482 - PP_0571 0.88 +1.6
668,482 - PP_0571 0.88 +0.5
668,482 - PP_0571 0.88 -1.0
668,482 - PP_0571 0.88 +0.1
668,482 - PP_0571 0.88 +0.3
668,482 - PP_0571 0.88 -2.3
668,482 - PP_0571 0.88 +0.7
668,570 - +0.0
668,771 - -1.5
668,817 + PP_0572 0.11 -1.3
668,817 + PP_0572 0.11 +0.9
668,836 - PP_0572 0.12 -0.6
668,966 + PP_0572 0.17 +0.7
668,992 + PP_0572 0.18 -0.7
668,993 - PP_0572 0.18 +0.4
668,993 - PP_0572 0.18 -1.4
668,993 - PP_0572 0.18 -0.8
669,255 + PP_0572 0.30 +0.7
669,256 - PP_0572 0.30 +0.2
669,389 + PP_0572 0.35 +0.5
669,389 + PP_0572 0.35 -0.0
669,465 - PP_0572 0.38 +0.3
669,465 - PP_0572 0.38 +0.5
669,516 + PP_0572 0.41 -2.0
669,516 + PP_0572 0.41 +0.6

Or see this region's nucleotide sequence