Strain Fitness in Pseudomonas putida KT2440 around PP_5569

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
3,501,405	+		PP_5567	0.72	+4.7
3,501,510	+				-0.5
3,501,511	-				-0.0
3,501,525	-				-0.5
3,501,770	+		PP_5568	0.22	-1.8
3,501,804	+		PP_5568	0.27	-0.2
3,501,805	-		PP_5568	0.27	+0.4
3,501,931	+		PP_5568	0.45	+1.1
3,501,957	-		PP_5568	0.49	-1.9
3,502,005	+		PP_5568	0.56	+1.7
3,502,006	-				+2.1
3,502,011	+		PP_5568	0.57	-1.8
3,502,097	+		PP_5568	0.69	+1.1
3,502,097	+		PP_5568	0.69	+0.3
3,502,194	+		PP_5568	0.83	+0.1
3,502,226	+		PP_5568	0.88	-0.4
3,502,247	+				-0.1
3,502,260	+				+0.2
3,502,320	+				+1.2
3,502,320	+				-0.3
3,502,392	+		PP_5569	0.23	+3.7
3,502,402	-		PP_5569	0.27	+1.0
3,502,414	-		PP_5569	0.33	+0.6
3,502,478	-		PP_5569	0.65	+1.5
3,502,478	-				+0.1
3,502,481	+		PP_5569	0.66	+1.6
3,502,520	-		PP_5569	0.85	-1.4
3,502,522	-		PP_5569	0.86	+0.6
3,502,593	+				+2.0
3,502,852	-		PP_5571	0.47	-1.1
3,503,026	-				-0.1
3,503,069	-		PP_5572	0.16	-0.1
3,503,154	+		PP_5572	0.46	+2.7
3,503,169	+		PP_5572	0.51	+0.0
3,503,169	+		PP_5572	0.51	-0.5
3,503,195	-		PP_5572	0.61	+0.7
3,503,427	-				+0.5
3,503,454	-				+2.8
3,503,454	-				-0.2