Strain Fitness in Pseudomonas putida KT2440 around PP_4920

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4918 and PP_4919 overlap by 10 nucleotidesPP_4919 and PP_4920 are separated by 173 nucleotidesPP_4920 and PP_4921 overlap by 32 nucleotides PP_4918: PP_4918 - conserved protein of unknown function, at 5,590,809 to 5,591,261 _4918 PP_4919: PP_4919 - ADP-ribose/sugar pyrophosphatase, at 5,591,252 to 5,591,881 _4919 PP_4920: PP_4920 - putative Lipoprotein, at 5,592,055 to 5,592,801 _4920 PP_4921: PP_4921 - Transporter, NCS1 nucleoside transporter family, at 5,592,770 to 5,594,053 _4921 Position (kb) 5592 5593Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5591.063 kb on + strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.064 kb on - strand, within PP_4918at 5591.065 kb on + strand, within PP_4918at 5591.066 kb on - strand, within PP_4918at 5591.066 kb on - strand, within PP_4918at 5591.188 kb on + strand, within PP_4918at 5591.188 kb on + strandat 5591.188 kb on + strand, within PP_4918at 5591.188 kb on + strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.189 kb on - strand, within PP_4918at 5591.263 kb on + strandat 5591.263 kb on + strandat 5591.264 kb on - strandat 5591.264 kb on - strandat 5591.264 kb on - strandat 5591.264 kb on - strandat 5591.271 kb on - strandat 5591.378 kb on + strand, within PP_4919at 5591.379 kb on - strand, within PP_4919at 5591.463 kb on + strand, within PP_4919at 5591.463 kb on + strand, within PP_4919at 5591.463 kb on + strand, within PP_4919at 5591.464 kb on - strand, within PP_4919at 5591.464 kb on - strand, within PP_4919at 5591.464 kb on - strand, within PP_4919at 5591.763 kb on - strand, within PP_4919at 5591.763 kb on - strand, within PP_4919at 5591.780 kb on + strand, within PP_4919at 5591.780 kb on + strand, within PP_4919at 5591.780 kb on + strand, within PP_4919at 5591.781 kb on - strand, within PP_4919at 5591.781 kb on - strand, within PP_4919at 5591.796 kb on + strand, within PP_4919at 5591.797 kb on - strand, within PP_4919at 5591.891 kb on + strandat 5591.892 kb on - strandat 5591.909 kb on + strandat 5591.984 kb on + strandat 5591.985 kb on - strandat 5591.989 kb on + strandat 5591.989 kb on + strandat 5591.989 kb on + strandat 5591.990 kb on - strandat 5591.990 kb on - strandat 5592.133 kb on + strand, within PP_4920at 5592.331 kb on + strandat 5592.332 kb on - strand, within PP_4920at 5592.343 kb on + strand, within PP_4920at 5592.343 kb on + strand, within PP_4920at 5592.343 kb on + strand, within PP_4920at 5592.344 kb on - strand, within PP_4920at 5592.344 kb on - strand, within PP_4920at 5592.367 kb on - strand, within PP_4920at 5592.376 kb on + strand, within PP_4920at 5592.377 kb on - strand, within PP_4920at 5592.377 kb on - strand, within PP_4920at 5592.436 kb on + strand, within PP_4920at 5592.436 kb on + strand, within PP_4920at 5592.437 kb on - strand, within PP_4920at 5592.437 kb on - strand, within PP_4920at 5592.437 kb on - strand, within PP_4920at 5592.487 kb on + strand, within PP_4920at 5592.487 kb on + strand, within PP_4920at 5592.487 kb on + strand, within PP_4920at 5592.671 kb on - strand, within PP_4920at 5592.692 kb on - strand, within PP_4920at 5592.692 kb on - strand, within PP_4920at 5592.692 kb on - strand, within PP_4920at 5592.692 kb on - strand, within PP_4920at 5592.692 kb on - strand, within PP_4920at 5592.692 kb on - strand, within PP_4920at 5592.700 kb on + strand, within PP_4920at 5592.701 kb on - strand, within PP_4920at 5592.701 kb on - strand, within PP_4920at 5592.701 kb on - strand, within PP_4920at 5592.716 kb on - strand, within PP_4920at 5592.768 kb on - strandat 5592.807 kb on - strandat 5592.889 kb on - strandat 5592.975 kb on + strand, within PP_4921at 5592.975 kb on + strand, within PP_4921at 5592.975 kb on + strand, within PP_4921at 5592.976 kb on - strand, within PP_4921at 5592.976 kb on - strand, within PP_4921at 5593.045 kb on - strand, within PP_4921at 5593.195 kb on + strand, within PP_4921at 5593.195 kb on + strand, within PP_4921at 5593.196 kb on - strand, within PP_4921at 5593.281 kb on + strand, within PP_4921at 5593.282 kb on - strand, within PP_4921at 5593.282 kb on - strand, within PP_4921at 5593.323 kb on + strand, within PP_4921at 5593.323 kb on + strand, within PP_4921at 5593.377 kb on + strandat 5593.559 kb on + strand, within PP_4921at 5593.560 kb on - strand, within PP_4921at 5593.560 kb on - strand, within PP_4921at 5593.560 kb on - strand, within PP_4921at 5593.709 kb on - strand, within PP_4921

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Per-strain Table

Position Strand Gene LocusTag Fraction 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
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5,591,063 + PP_4918 0.56 +0.8
5,591,064 - PP_4918 0.56 +1.3
5,591,064 - PP_4918 0.56 +0.9
5,591,064 - PP_4918 0.56 -0.7
5,591,064 - PP_4918 0.56 +1.2
5,591,065 + PP_4918 0.57 -0.4
5,591,066 - PP_4918 0.57 -0.2
5,591,066 - PP_4918 0.57 -0.9
5,591,188 + PP_4918 0.84 -1.2
5,591,188 + +1.9
5,591,188 + PP_4918 0.84 +0.3
5,591,188 + PP_4918 0.84 +0.1
5,591,189 - PP_4918 0.84 -1.5
5,591,189 - PP_4918 0.84 -1.0
5,591,189 - PP_4918 0.84 +0.4
5,591,189 - PP_4918 0.84 -0.2
5,591,189 - PP_4918 0.84 +0.8
5,591,189 - PP_4918 0.84 +0.2
5,591,189 - PP_4918 0.84 -0.4
5,591,189 - PP_4918 0.84 -0.2
5,591,263 + -0.0
5,591,263 + -1.0
5,591,264 - +0.3
5,591,264 - +0.6
5,591,264 - +0.4
5,591,264 - +2.8
5,591,271 - +0.6
5,591,378 + PP_4919 0.20 -0.5
5,591,379 - PP_4919 0.20 +0.1
5,591,463 + PP_4919 0.33 +1.8
5,591,463 + PP_4919 0.33 -1.0
5,591,463 + PP_4919 0.33 -1.3
5,591,464 - PP_4919 0.34 -0.1
5,591,464 - PP_4919 0.34 +1.4
5,591,464 - PP_4919 0.34 -0.5
5,591,763 - PP_4919 0.81 +0.3
5,591,763 - PP_4919 0.81 +1.3
5,591,780 + PP_4919 0.84 +0.3
5,591,780 + PP_4919 0.84 +2.5
5,591,780 + PP_4919 0.84 +3.5
5,591,781 - PP_4919 0.84 +0.2
5,591,781 - PP_4919 0.84 -0.3
5,591,796 + PP_4919 0.86 +1.9
5,591,797 - PP_4919 0.87 +0.1
5,591,891 + +0.1
5,591,892 - +0.6
5,591,909 + -0.2
5,591,984 + +3.8
5,591,985 - -0.6
5,591,989 + +0.5
5,591,989 + -0.4
5,591,989 + +0.1
5,591,990 - +0.5
5,591,990 - +0.5
5,592,133 + PP_4920 0.10 +0.4
5,592,331 + +0.8
5,592,332 - PP_4920 0.37 +1.5
5,592,343 + PP_4920 0.39 +0.2
5,592,343 + PP_4920 0.39 +2.2
5,592,343 + PP_4920 0.39 +0.3
5,592,344 - PP_4920 0.39 -0.2
5,592,344 - PP_4920 0.39 -0.7
5,592,367 - PP_4920 0.42 +1.1
5,592,376 + PP_4920 0.43 +1.1
5,592,377 - PP_4920 0.43 +1.3
5,592,377 - PP_4920 0.43 +1.0
5,592,436 + PP_4920 0.51 +0.4
5,592,436 + PP_4920 0.51 -0.7
5,592,437 - PP_4920 0.51 +0.9
5,592,437 - PP_4920 0.51 +1.9
5,592,437 - PP_4920 0.51 +0.9
5,592,487 + PP_4920 0.58 -0.1
5,592,487 + PP_4920 0.58 +0.9
5,592,487 + PP_4920 0.58 -0.7
5,592,671 - PP_4920 0.82 -0.7
5,592,692 - PP_4920 0.85 -1.0
5,592,692 - PP_4920 0.85 -0.7
5,592,692 - PP_4920 0.85 -1.0
5,592,692 - PP_4920 0.85 +1.1
5,592,692 - PP_4920 0.85 -0.8
5,592,692 - PP_4920 0.85 -0.7
5,592,700 + PP_4920 0.86 -0.1
5,592,701 - PP_4920 0.86 +1.2
5,592,701 - PP_4920 0.86 +1.8
5,592,701 - PP_4920 0.86 +0.3
5,592,716 - PP_4920 0.88 +0.8
5,592,768 - +2.2
5,592,807 - +1.1
5,592,889 - -0.2
5,592,975 + PP_4921 0.16 -0.7
5,592,975 + PP_4921 0.16 -0.5
5,592,975 + PP_4921 0.16 +1.4
5,592,976 - PP_4921 0.16 +1.0
5,592,976 - PP_4921 0.16 -1.5
5,593,045 - PP_4921 0.21 -0.3
5,593,195 + PP_4921 0.33 -0.8
5,593,195 + PP_4921 0.33 +0.7
5,593,196 - PP_4921 0.33 -0.3
5,593,281 + PP_4921 0.40 +1.4
5,593,282 - PP_4921 0.40 +1.1
5,593,282 - PP_4921 0.40 -1.6
5,593,323 + PP_4921 0.43 +0.4
5,593,323 + PP_4921 0.43 +0.7
5,593,377 + +1.2
5,593,559 + PP_4921 0.61 -2.7
5,593,560 - PP_4921 0.62 +0.1
5,593,560 - PP_4921 0.62 -2.3
5,593,560 - PP_4921 0.62 +0.2
5,593,709 - PP_4921 0.73 +0.2

Or see this region's nucleotide sequence