Strain Fitness in Pseudomonas putida KT2440 around PP_3928

Experiment: 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.
4,432,571	-		PP_3927	0.57	-0.0
4,432,583	+		PP_3927	0.58	-0.3
4,432,584	-		PP_3927	0.59	+0.4
4,432,584	-		PP_3927	0.59	-0.2
4,432,584	-		PP_3927	0.59	-1.1
4,432,584	-		PP_3927	0.59	-0.3
4,432,617	+		PP_3927	0.63	-0.2
4,432,618	-		PP_3927	0.63	-0.1
4,432,851	+				+0.2
4,432,851	+				+1.5
4,432,852	-				+0.3
4,432,852	-				+0.5
4,432,852	-				-0.7
4,432,852	-				-1.1
4,432,895	+				-0.0
4,432,895	+				-0.2
4,432,895	+				+0.2
4,432,896	-				-0.3
4,432,896	-				-0.2
4,432,897	+				-0.2
4,432,897	+				-1.8
4,432,898	-				-1.5
4,432,898	-				-0.2
4,432,898	-				-0.4
4,432,898	-				+1.1
4,432,951	+				-0.1
4,432,951	+				+0.4
4,432,951	+				-0.3
4,432,951	+				+1.0
4,432,951	+				+1.7
4,432,951	+				-1.4
4,432,951	+				+0.1
4,432,951	+				+1.4
4,432,952	-				-0.2
4,432,952	-				+0.8
4,432,952	-				+0.1
4,432,952	-				+0.2
4,432,952	-				+0.3
4,432,952	-				-0.1
4,433,048	-				-0.3
4,433,155	+		PP_5648	0.17	-1.1
4,433,158	+		PP_5648	0.18	-1.9
4,433,159	-		PP_5648	0.19	+1.3
4,433,220	-		PP_5648	0.36	-0.2
4,433,258	-		PP_5648	0.47	-1.2
4,433,534	+				-0.4
4,433,574	+				-0.1
4,433,574	+				-0.5
4,433,575	-				-0.1
4,433,575	-				-0.2
4,433,575	-				+0.4
4,433,575	-				+3.7
4,433,703	+		PP_3928	0.48	-0.3
4,433,796	+		PP_3928	0.80	+1.2
4,433,796	+		PP_3928	0.80	+0.6
4,433,796	+		PP_3928	0.80	+0.9
4,433,796	+		PP_3928	0.80	+1.1
4,433,796	+		PP_3928	0.80	-1.4
4,433,797	-		PP_3928	0.81	+0.0
4,433,797	-		PP_3928	0.81	+1.6
4,433,797	-		PP_3928	0.81	+0.1
4,433,797	-		PP_3928	0.81	-0.9
4,433,797	-		PP_3928	0.81	+0.2
4,433,797	-		PP_3928	0.81	+0.2
4,433,797	-		PP_3928	0.81	+1.1
4,433,797	-		PP_3928	0.81	+0.9
4,433,928	-				+2.7
4,433,928	-				-0.4
4,433,928	-				-1.6
4,434,054	-		PP_3929	0.15	+2.1
4,434,073	+		PP_3929	0.22	-0.5
4,434,090	+		PP_3929	0.28	-0.2
4,434,091	-		PP_3929	0.28	-1.5
4,434,091	-		PP_3929	0.28	+0.7
4,434,092	+		PP_3929	0.29	-0.9
4,434,093	-		PP_3929	0.29	-1.1
4,434,169	-		PP_3929	0.58	-0.4
4,434,270	+				+0.5
4,434,270	+				-1.7
4,434,270	+				+0.5
4,434,271	-				+0.4
4,434,273	+				+2.1
4,434,273	+				-0.6
4,434,273	+				-1.5
4,434,273	+				-0.2
4,434,274	-				-0.7
4,434,274	-				-0.6
4,434,351	+				+1.7
4,434,395	+		PP_3930	0.10	+2.4
4,434,395	+		PP_3930	0.10	-1.1
4,434,396	-		PP_3930	0.10	+1.6
4,434,396	-				+0.4
4,434,626	+		PP_3930	0.69	+1.0
4,434,810	+				+0.9
4,434,832	+				+0.6